SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene12015

Length: 2834 nt

UniGene Fasta

>uagpf_v2_unigene12015
CGTCGTGACCTTGGCTGTCACTCAAGCTCTTCCTTGCCCGACGAAACCATCGAGAGGACACAAACTCGGCTCGTCCGCTGCGGCAGCCAAAGAGAGGGATCTAGAACATCGACGTGGCAAAAATCTGCCCGGCTAAAGCCTCCAAGGCTTCTCTTTTTCTTATCGTGCCTCACTACCATATTCTTCATTTTATTTGTCTCCGAGGGCTTGGGTTTCTCAGAGTTCACATCTTCGGCATCGATCGTGGAAAAAACCCCATAATCCCAATACTCTCATTTTATCCACAGTCAATCTCTCCCCAAGGGTTTCAGTTCAGAGATTTCATCCATGGCGGCTGCGGCTCATGTTCATTTGTTCGCAGCTGGCATACCTCATACCAACACCGGTTCTTCCAGAAGATCCAGCCGTGGAAATCGAAATAGCGCCTTCTTTGGCCTCGGTCTGGGTAAAAATCCCGTCTTCAATGGTGGATTTGGCAGCTTGCGCAGCAAGCAGCAGCAGCAATCCAGAAGGCGGGCCGCGGGGCCTCTGAGGGTTGTCTGTGAGAAGGTCGTTGGAATCGATTTGGGGACTACGAATTCGGCCGTGGCGGCCATGGAAGGAGGTAAGCCCACCATCATCACTAATGCTGAGGGCCAGCGAACGACTCCCTCTGTGGTTGCTTACTCCAAGAACGGGGACCGTCTCGTCGGGCAAATTGCGAAGCGGCAGGCCGTGGTGAACCCTGAGAACACCTTTTTCTCCGTGAAGAGGTTCATTGGGAGAAAGATGTCAGAGGTGTCCGAGGAGTCGAAGCAGGTCTCCTATCGCGTTATCCGTGACGACAATGGTAATGTCAAGCTCGATTGTCCTGCAATTGGTAAACAATTCGCGGCCGAAGAGATTTCTGCGCAGGTTTTGAGAAAGCTCGTTGATGATGCCACCAAGTTTTTAAATGATAAGGTCAACAAGGCTGTGATAACTGTTCCTGCATATTTCAACGATTCTCAGAGAACAGCCACAAAGGATGCAGGCCGGATTGCTGGCTTGGAAGTCCTGAGAATTATCAATGAACCCACTGCTGCTTCATTGGCCTATGGGTTCGAGAAGAAGAATAATGAAACAATACTTGTGTTTGATCTTGGTGGTGGGACATTTGATGTCTCAGTGCTTGAGGTTGGAGATGGTGTATTTGAGGTGCTTTCCACTTCAGGTGACACACATCTGGGAGGAGATGACTTCGATAAGAGAATTGTTGATTGGCTGGCCTCCAGCTTTAAGAAGATGAGGGAATCGACTTGTTGAAAGACAAACAAGCTCTTCAACGTCTAACTGAAACCGCTGAGAAAGCTAAGATTGAATTGTCATCACTTACCCAAACAAGCATCAGTTTGCCATTCATAACAGCCACTGCAGATGGGCCCAAGCATATTGAGACAACCCTTACACGGGTCAAATTTGAAGAGCTGTGCTCTGATTTGCTTGACAGGCTGAAGACTCCTGTCGAGAATGCATTGAGAGATGCCAAGTTGTCTTATAAGGACTTGGATGAAATTATTTTGGTTGGTGGGTCTACTAGAATTCCCGCTGTTCAGGATCTGGTCAAGAGAGTGACCAACAAAGAGCCAAATGTCACTGTCAACCCAGATGAGGTTGTAGCTCTAGGGGCAGCAGTCCAGGCTGGAGTGCTAGCGGGTGATGTTAGCGACATCGTGCTTCTCGACGTGACCTCCGCTGTCACTTGGGCTGGAAACTCTTGGTGGTGTAATGACGAAAATCATTCCTCGGAACACTACACTACCAACCTCAAAATCTGAGGTGTTTTCTACGGCTGCTGATGGTCAGACAAGTGTTGAAATTAATGTTCTGCAAGGTGAACGAGAATTTGTCAAGGACAACAAGTCGCTCGGGAGTTTTCGGTTGGATGGAATTCCTCCTGCTCCACGAGGTGTACCTCAAATAGAGGTGAAGTTTGATATTGATGCAAACGGTATTCTTTCAGTCGCTGCTGTGGACAAAGGCACTCAAAAGAAGCAGGATATAACAATTACCGGTGCTAGCACCTTGCCAACTGATGAGGTTGAAAAAATGGTGAAAGAGGCTGAGAGATTTTCTAAAGAAGACAAAGAGAAGAGAGAAGCTATTGATACAAAGAATCAAGCTGATTCTGTCGTCTATCAGACTGAGAAGCAGTTGAAGGAACTTGGTGATAAGGTACCCGCAGAAGTCAAGGACAAGGTGGAAGCTAAGCTGAAAGAACTTAAAGATGCAATTGCCAGTGGGTCAACGCAGTCAATGAAGGATACGATGGCAGCTCTCAACCAAGAAGTGATGCAGTTAGGGCAATCTCTTTACAACCAGCCTGGAGCCGCTGGCGGACCAACCGCTGGCGGGGAAGCAGGGTCTGGTAGTACTGGAGGAAAAACATCTGGGGGTGATGATGTTATAGATGCTGATTTTACAGACAGCAACTAAACCCACTATAATGGGTTACTTGATTTCTTGGAATAATTTTCATTCTAGTTTCAGAGTTGGCCCGTAGAGAACATGTTTAGTTGTGAATGGAGCTTTTTGTGATAGAACATTTTACCTCTAGCATTTGAAATACGTCTTATGTTTTGTAGATAAAATTTATCACTCCATTCAAAAGGTGTTTCAATCGGGGACAGAGCAGAATACCGCCAACAAGATGTTTGTTTCACGGTTCTCATCTTTTTACCCGCAAGAAATATATAGTGGGATGTACCTTGAGTTCTTTAATGAATTTTAAATAATCAATGCTCACAAATTTTTGTAATTAAATTGTTACAACTTCGTTGCAACTATTAATCATCATATAATAGTGTTCCTCTAGG

Ace file of the UniGene uagpf_v2_unigene12015

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15311	117/122

Source	Descriptions	Term	Type	Identity
AutoFact	Chloroplast HSP70 n=4 Tax=rosids RepID=A2TJV6_CUCSA	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	stromal 70 kda heat shock-related chloroplastic-like	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	94%
Blast2go	response to heat	GO:0009408	Biological Process	94%
Blast2go	protein targeting to chloroplast	GO:0045036	Biological Process	94%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	94%
Blast2go	ATP binding	GO:0005524	Molecular Function	94%
Blast2go	protein binding	GO:0005515	Molecular Function	94%
Blast2go	mitochondrion	GO:0005739	Cellular Component	94%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	94%
Blast2go	thylakoid	GO:0009579	Cellular Component	94%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	94%
Blast2go	nucleus	GO:0005634	Cellular Component	94%

Source	InterPros	Term	Type	Identity
Sma3	Chaperone DnaK	IPR012725	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Heat shock protein 70	IPR013126	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLU0

Fln msg: Overlapping hits, possible frame ERROR between 1263 and 1260,

Fln protein: MAAAAHVHLFAAGIPHTNTGSSRRSSRGNRNSAFFGLGLGKNPVFNGGFGSLRSKQQQQSRRRAAGPLRVVCEKVVGIDLGTTNSAVAAMEGGKPTIITNAEGQRTTPSVVAYSKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVSEESKQVSYRVIRDDNGNVKLDCPAIGKQFAAEEISAQVLRKLVDDATKFLNDKVNKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASSFxxxEGIDLLKDKQALQRLTETAEKAKIELSSLTQTSISLPFITATADGPKHIETTLTRVKFEELCSDLLDRLKTPVENALRDAKLSYKDLDEIILVGGSTRIPAVQDLVKRVTNKEPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTSAVTWAGNSWWCNDENHSSEHYTTNLKI*GVFYGC*WSDKC*N*CSAR*TRICQGQQVAREFSVGWNSSCSTRCTSNRGEV*Y*CKRYSFSRCCGQRHSKEAGYNNYRC*HLAN**G*KNGERG*EIF*RRQREERSY*YKESS*FCRLSD*EAVEGTW**GTRRSQGQGGS*AERT*RCNCQWVNAVNEGYDGSSQPRSDAVRAISLQPAWSRWRTNRWRGSRVW*YWRKNIWG*

Protein Length: 698

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGCTCTTCCTTGCCCGACGAAACCATCGAGAGGACACAAACTCGGCTCGTCCGCTGCGGCAGCCAAAGAGAGGGATCTAGAACATCGACGTGGCAAAAATCTGCCCGGCTAAAGCCTCCAAGGCTTCTCTTTTTCTTATCGTGCCTCACTACCATATTCTTCATTTTATTTGTCTCCGAGGGCTTGGGTTTCTCAGAGTTCACATCTTCGGCATCGATCGTGGAAAAAACCCCATAATCCCAATACTCTCATTTTATCCACAGTCAATCTCTCCCCAAGGGTTTCAGTTCAGAGATTTCATCC_-_ATGGCGGCTGCGGCTCATGTTCATTTGTTCGCAGCTGGCATACCTCATACCAACACCGGTTCTTCCAGAAGATCCAGCCGTGGAAATCGAAATAGCGCCTTCTTTGGCCTCGGTCTGGGTAAAAATCCCGTCTTCAATGGTGGATTTGGCAGCTTGCGCAGCAAGCAGCAGCAGCAATCCAGAAGGCGGGCCGCGGGGCCTCTGAGGGTTGTCTGTGAGAAGGTCGTTGGAATCGATTTGGGGACTACGAATTCGGCCGTGGCGGCCATGGAAGGAGGTAAGCCCACCATCATCACTAATGCTGAGGGCCAGCGAACGACTCCCTCTGTGGTTGCTTACTCCAAGAACGGGGACCGTCTCGTCGGGCAAATTGCGAAGCGGCAGGCCGTGGTGAACCCTGAGAACACCTTTTTCTCCGTGAAGAGGTTCATTGGGAGAAAGATGTCAGAGGTGTCCGAGGAGTCGAAGCAGGTCTCCTATCGCGTTATCCGTGACGACAATGGTAATGTCAAGCTCGATTGTCCTGCAATTGGTAAACAATTCGCGGCCGAAGAGATTTCTGCGCAGGTTTTGAGAAAGCTCGTTGATGATGCCACCAAGTTTTTAAATGATAAGGTCAACAAGGCTGTGATAACTGTTCCTGCATATTTCAACGATTCTCAGAGAACAGCCACAAAGGATGCAGGCCGGATTGCTGGCTTGGAAGTCCTGAGAATTATCAATGAACCCACTGCTGCTTCATTGGCCTATGGGTTCGAGAAGAAGAATAATGAAACAATACTTGTGTTTGATCTTGGTGGTGGGACATTTGATGTCTCAGTGCTTGAGGTTGGAGATGGTGTATTTGAGGTGCTTTCCACTTCAGGTGACACACATCTGGGAGGAGATGACTTCGATAAGAGAATTGTTGATTGGCTGGCCTCCAGCTTTxxxxxxxxxGAGGGAATCGACTTGTTGAAAGACAAACAAGCTCTTCAACGTCTAACTGAAACCGCTGAGAAAGCTAAGATTGAATTGTCATCACTTACCCAAACAAGCATCAGTTTGCCATTCATAACAGCCACTGCAGATGGGCCCAAGCATATTGAGACAACCCTTACACGGGTCAAATTTGAAGAGCTGTGCTCTGATTTGCTTGACAGGCTGAAGACTCCTGTCGAGAATGCATTGAGAGATGCCAAGTTGTCTTATAAGGACTTGGATGAAATTATTTTGGTTGGTGGGTCTACTAGAATTCCCGCTGTTCAGGATCTGGTCAAGAGAGTGACCAACAAAGAGCCAAATGTCACTGTCAACCCAGATGAGGTTGTAGCTCTAGGGGCAGCAGTCCAGGCTGGAGTGCTAGCGGGTGATGTTAGCGACATCGTGCTTCTCGACGTGACCTCCGCTGTCACTTGGGCTGGAAACTCTTGGTGGTGTAATGACGAAAATCATTCCTCGGAACACTACACTACCAACCTCAAAATCTGAGGTGTTTTCTACGGCTGCTGATGGTCAGACAAGTGTTGAAATTAATGTTCTGCAAGGTGAACGAGAATTTGTCAAGGACAACAAGTCGCTCGGGAGTTTTCGGTTGGATGGAATTCCTCCTGCTCCACGAGGTGTACCTCAAATAGAGGTGAAGTTTGATATTGATGCAAACGGTATTCTTTCAGTCGCTGCTGTGGACAAAGGCACTCAAAAGAAGCAGGATATAACAATTACCGGTGCTAGCACCTTGCCAACTGATGAGGTTGAAAAAATGGTGAAAGAGGCTGAGAGATTTTCTAAAGAAGACAAAGAGAAGAGAGAAGCTATTGATACAAAGAATCAAGCTGATTCTGTCGTCTATCAGACTGAGAAGCAGTTGAAGGAACTTGGTGATAAGGTACCCGCAGAAGTCAAGGACAAGGTGGAAGCTAAGCTGAAAGAACTTAAAGATGCAATTGCCAGTGGGTCAACGCAGTCAATGAAGGATACGATGGCAGCTCTCAACCAAGAAGTGATGCAGTTAGGGCAATCTCTTTACAACCAGCCTGGAGCCGCTGGCGGACCAACCGCTGGCGGGGAAGCAGGGTCTGGTAGTACTGGAGGAAAAACATCTGGGGGTGA___TGATGTTATAGATGCTGATTTTACAGACAGCAACTAAACCCACTATAATGGGTTACTTGATTTCTTGGAATAATTTTCATTCTAGTTTCAGAGTTGGCCCGTAGAGAACATGTTTAGTTGTGAATGGAGCTTTTTGTGATAGAACATTTTACCTCTAGCATTTGAAATACGTCTTATGTTTTGTAGATAAAATTTATCACTCCATTCAAAAGGTGTTTCAATCGGGGACAGAGCAGAATACCGCCAACAAGATGTTTGTTTCACGGTTCTCATCTTTTTACCCGCAAGAAATATATAGTGGGATGTACCTTGAGTTCTTTAATGAATTTTAAATAATCAATGCTCACAAATTTTTGTAATTAAATTGTTACAACTTCGTTGCAACTATTAATCATCATATAATAGTGTTCCTCTAGG

Fln Alignment:

Contig12015___GIPHTNTXXXXXXXXXXXXXAFFGLGLGKNPVFNGGFGSLXXXXXXXXXXXAAGPLRVVCEKVVGIDLGTTNSAVAAMEGGKPTIITNAEGQRTTPSVVAYSKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVSEESKQVSYRVIRDDNGNVKLDCPAIGKQFAAEEISAQVLRKLVDDATKFLNDKVNKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASSFKxDEGIDLLKDKQALQRLTETAEKAKIELSSLTQTSISLPFITATADGPKHIETTLTRVKFEELCSDLLDRLKTPVENALRDAKLSYKDLDEIILVGGSTRIPAVQDLVKRVTNKEPNVTVNPDEXXXXXXXXXXXXXXXXXSDIVLLDVT
B8LLU0________________GIPHTHTSSSRKPSRGNRNSAFFGLGLGKNPVFNGGFGSLRSKQPQQSRRRAAGPLRVVCEKVVGIDLGTTNSAVAAMEGGKPTIITNAEGQRTTPSVVAYSKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVSEESKQVSYRVIRDDNGNVKLDCPAIGKQFAAEEISAQVLRKLVDDATKFLNDKVNKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASSFKxDEGIDLLKDKQALQRLTETAEKAKIELSSLTQTSISLPFITATADGPKHIETTLTRVKFEELCSDLLDRLKTPVENSLRDAKLSYKDLDEIILVGGSTRIPAVQDLVKRVTNKEPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVT

SNPs (tot: 124)

Position	A %	C %	G %	T %	Probability
171		60	40		1.0
175	60		40		1.0
176		60		40	1.0
177			40	60	1.0
183	60			40	1.0
184			40	60	1.0
185			40	60	1.0
192		20		60	0.99255
193		20		80	0.995493
194		20		80	0.995493
195	20	20		60	0.99255
264	88	11			0.923564
268		88		11	0.923564
533		90	10		0.90298
535		10	90		0.90298
537			90	10	0.90298
538		10	90		0.90298
539	10		90		0.90298
581	90			10	0.90298
582	90	10			0.90298
583			10	90	0.90298
587	10		90		0.90298
590			90	10	0.90298
595			85	14	0.993533
597		85		14	0.993533
601		14	85		0.993533
602			85	14	0.993533
603	85	14			0.993533
1000	83	16			0.994512
1002		83		16	0.994512
1004	83		16		0.994512
1005		83		16	0.994512
1006	83		16		0.994512
1008	83	16			0.994512
1009		16	83		0.994512
1010			83	16	0.994512
1011	83			16	0.994512
1012			16	83	0.994512
1015	83			16	0.994512
1017			83	16	0.994512
1020			83	16	0.994512
1021		16	83		0.994512
1023		16		83	0.994512
1063		14		85	0.993533
1065		85		14	0.993533
1066		14		85	0.993533
1068		85		14	0.993533
1069			14	85	0.993533
1070	14			85	0.993533
1072	85	14			0.993533
1078		85	14		0.993533
1081		14		85	0.993533
1082			85	14	0.993533
1083		14	85		0.993533
1084	14		85		0.993533
1226			75	25	0.996473
1707		75		25	1.0
1709	25			75	1.0
1710		80		20	1.0
1713			80	20	1.0
1718		20		80	1.0
1719		20	80		1.0
1964	90	10			0.999898
1965			10	90	0.999898
1967		10	90		0.999898
1968	90		10		0.999898
1971	10	90			0.999898
1972	90	10			0.999898
1973	90	10			0.999898
1974	90			10	0.999898
1975		90		10	0.999898
1978		10		90	0.999898
1979	90			10	0.999898
1980			10	90	0.999898
1983	10			90	0.999898
1984		10		90	0.999898
2119			90	10	0.90298
2120	90	10			0.90298
2122	90	10			0.90298
2131		11		88	0.923564
2133	77	11		11	0.968132
2134	11	11		77	0.968132
2135	77		11	11	0.968132
2136		88	11		0.923564
2138	87		12		0.992554
2139	87			12	0.992554
2143			12	87	0.992554
2145	87	12			0.992554
2152			12	87	0.992554
2153	12			87	0.992554
2183	85			14	0.993533
2184	85	14			0.993533
2186		14	85		0.993533
2262		87		12	0.992554
2356		50		50	1.0
2364			80	20	0.999996
2365	80	20			0.999996
2366		80	20		0.999996
2367		80		20	0.999996
2368	80		20		0.999996
2373		83		16	0.999991
2378			66	33	1.0
2379			83	16	0.999991
2380			83	16	0.999991
2381		16	83		0.999991
2382	83	16			0.999991
2383	66	16		16	0.999991
2384			83	16	0.999991
2387		8	66	8	0.999991
2407	90		10		0.90298
2409	90	10			0.90298
2410	90	10			0.90298
2411	90			10	0.90298
2412		90		10	0.90298
2413	90		10		0.90298
2414			10	90	0.90298
2418			90	10	0.90298
2419		10	90		0.90298
2420	10		90		0.90298
2421		10	90		0.90298
2493	92			4	0.98868
2494	92	2	4		0.98868
2496	92	4	2		0.98868
2783	66		33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
491	503	AGC AGC AGC AGC A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain