SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene12008

Length: 1593 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene12008

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15381	103/114
SustainPine v2.0	sp_v2.0_unigene79571	5/114
SustainPine v2.0	sp_v2.0_unigene80102	1/114

Source	Descriptions	Term	Type	Identity
AutoFact	26S proteasome regulatory subunit N7 [Arabidopsis thaliana] ref\|NP_974611.1\| 26S proteasome regulatory subunit N7 [Arabidopsis thaliana] sp\|Q93Y35.1\|PSMD6_ARATH RecName: Full=Probable 26S proteasome non-ATPase regulatory subunit 6; AltName: Full=26S prote	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	26s proteasome non-atpase regulatory subunit 6	-	-	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	91%
Blast2go	proteasome complex	GO:0000502	Cellular Component	0.0	91%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome component (PCI) domain	IPR000717	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NT48

Fln msg: Overlapping hits, possible frame ERROR between 569 and 527,

Fln protein: MDPQEGKQEPKLVLAHKIFLLRHPDVPDIEKVELKNEVFNLIKAEDMANLYESLCEELGWEIDQSLLQTMGGKIEEELKKLDEKVSDAEENLGESEVREAHLAKSLYYIRIGDKEKALEQIKITEGKTVAVGxxxxxxxxxxxxxxxxMDFDLISKGIDKAKSLFDEGGDWERKNRLKVYEGLYCMSTRNFKKAAELFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVISKIPHLSDFLNSLYGCQYKSFFVAFAGLTDQIRLDRYLHPHFRYYMREVRTVVYSQFLESYKSVTMEAMARAFGVSVDFIDRELSRFIAAGRLHCKIDKVVGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL*

Protein Length: 388

Fln nts: TGAAAAAGAGAGGTAAAGCGGCGTCGTGACCTTGGCTGTCACTCCTTTTTTTCTTCTCATTTCTCCATATATGTTCTGTCGGGGTTTCTCATAAACAGATTCAAGATTTGTCTGGTTTGTGTGTAACG_-_ATGGATCCCCAAGAAGGAAAGCAAGAGCCCAAGTTAGTGTTAGCCCACAAGATTTTTCTGCTCAGACATCCCGATGTTCCTGACATTGAAAAAGTCGAGCTCAAGAATGAGGTTTTCAATCTTATCAAGGCGGAGGACATGGCGAATTTGTACGAGTCATTATGCGAAGAATTAGGGTGGGAGATAGATCAAAGCCTTTTACAGACCATGGGGGGTAAGATAGAAGAAGAACTCAAGAAACTCGACGAAAAAGTTAGTGATGCAGAAGAGAATTTAGGTGAAAGTGAAGTAAGAGAGGCACATCTTGCCAAATCCTTGTACTACATACGCATTGGTGACAAGGAAAAAGCTTTGGAGCAAATCAAAATTACCGAGGGTAAAACAGTTGCTGTAGGCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATGGACTTTGATTTGATTTCGAAAGGCATTGATAAAGCTAAGAGTTTGTTCGACGAAGGGGGTGATTGGGAAAGGAAAAACCGACTGAAGGTGTATGAAGGCCTTTACTGTATGTCTACACGAAATTTCAAGAAAGCTGCTGAGCTATTTTTGGATTCTATTTCAACATTCACAACATATGAGCTTTTCCCATATGATACCTTCATATTCTACACTGTGCTGACGAGTATAATCTCACTGGACAGAGTCTCCCTAAAGCAAAAGGTGGTGGATGCACCTGAGATTTTGACTGTGATTAGCAAGATACCACATCTTTCAGACTTTTTGAATTCACTTTATGGCTGTCAATACAAGTCATTCTTTGTTGCATTTGCTGGCCTGACAGATCAAATAAGATTAGATCGCTACTTGCATCCACATTTCCGATATTACATGAGGGAAGTCCGCACTGTTGTTTATTCTCAGTTTCTAGAATCCTACAAGAGTGTAACCATGGAGGCTATGGCAAGAGCTTTTGGTGTTAGTGTTGATTTTATTGACAGAGAACTTTCTCGTTTCATAGCTGCAGGTAGGCTTCACTGCAAAATAGATAAAGTTGTTGGTGTTCTAGAAACTAACAGGCCGGATGCTAAAAATGCTCTCTATCAAGCAACTATCAAACAAGGAGACTTTTTGTTGAACCGCATTCAGAAACTCTCCAGAGTAATTGACCTTTAA___AAATAGTTCAGAAGTGACCCACTTTCCTTGCTGCTAAAGTGCCATTTTGAAATTTCACATTTAAGATGAAGGAAGCATTATCATTCCTTTAAAATTTCAGACTGTATTTCAAAGTTATTAGACTTTGGCATTTAATTGATTGCATTGTAAGTACACTTACGTCTTCCATTTGTATCAGTACACTAGTTTTCTTGGAAAGGTGGCAACAATAACGACGTGAAGTTAACTTAGTAAATTCTGTTTATCTCATTTAGATCTTTTAACCATGGCTGATTTTTTAGAATGATCGCTTGGGTCATTAGTTT

Fln Alignment:

Contig12008___MDPQEGKQEPKLVLAHKIFLLRHPDVPDIEKVELKNEVFNLIKAEDMANLYESLCEELGWEIDQSLLQTMGGXXXXXXXXXXXXVSDAEENLGESEVREAHLAKSLYYIRIGDKEKALEQIKITEGKTVAVGQxxxxxxxxxxxxxxFMDFDLISKGIDKAKSLFDEGGDWERKNRLKVYEGLYCMSTRNFKKAAELFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVISKIPHLSDFLNSLYGCQYKSFFVAFAGLTDQIRLDRYLHPHFRYYMREVRTVVYSQFLESYKSVTMEAMARAFGVSVDFIDRELSRFIAAGRLHCKIDKVVGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL
A9NT48________________MDPQEGTQEPKLILAHKIFLLRHPDVPDIEKIELKNEVFNLIKAEDMANLYESLCGELGWDIDQDLLQTMRAKIEEELKKLDEKVSDAEENLGESEVREAHLAKSLYYIRIGDKEKALEQIKITEGKTVAVGQxxxxxxxxxxxxxxFMDFDLISKGIDKAKNLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAAELFLDSISTFTTYELFPYDNFIFYTVLTSIISLDRVSLKQKVVDAPEILAVISKIPHLSDFLNSLYGCQYKSFFVAFAGLTDQIRLDRYLHPHFRYYMREVRTVVYSQFLESYKSVTMEAMARAFGVSVDFIDRELSRFIAAGRLHCKIDKVVGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL

SNPs (tot: 112)

Position	A %	C %	G %	T %	Probability
22	33	66			1.0
23	33		66		1.0
24	33			66	1.0
25	33	66			1.0
30		33	66		1.0
31		33	66		1.0
32			33	66	1.0
34			33	66	1.0
37		25		75	0.996473
41	50			50	1.0
42		50	50		1.0
43	25			25	0.995533
44		75		25	0.996473
46	25			75	0.996473
49			25	75	0.996473
50		25		75	0.996473
52			25	75	0.996473
56	25			75	0.996473
60	80		20		0.995493
62			20	80	0.995493
64		80	20		0.995493
65	20			80	0.995493
68	80			20	0.995493
70	80		20		0.995493
71			20	80	0.995493
72	80	20			0.995493
73		14		85	0.993533
76		14		85	0.993533
77		85	14		0.993533
78	14			85	0.993533
79		14	85		0.993533
80	14			85	0.993533
82	5	10	10		0.999718
83			89	10	0.999919
84	10		73	15	1.0
85		15	84		1.0
86		10	89		0.999919
88		10	5	84	0.999846
89	5		10	84	0.999846
90		89	10		0.999919
92		89	10		0.999919
93	84			15	1.0
94		21		78	1.0
95	84		5	10	0.999846
96	73	21	5		1.0
97	84	5		10	0.999846
98		84	5		0.999846
160		94	5		0.9982
161	94			5	0.9982
162	94	5			0.9982
165			5	94	0.9982
168		5		94	0.9982
169		5	94		0.9982
172	94		5		0.9982
175		94		5	0.9982
176		94	5		0.9982
177	94			5	0.9982
180	94	5			0.9982
181			94	5	0.9982
182	94	5			0.9982
183	5			94	0.9982
958		11	88		0.923564
959	88			11	0.923564
962	88		11		0.923564
963	88	11			0.923564
967	88	11			0.923564
969	88			11	0.923564
970		11		88	0.923564
971			11	88	0.923564
972	88			11	0.923564
975		11		88	0.923564
977			88	11	0.923564
978		88		11	0.923564
979			11	88	0.923564
980	77		11		0.968132
982			10	90	0.90298
986	90		10		0.90298
987			10	90	0.90298
989	12	62	25		1.0
990	87			12	0.992554
992	75	12	12		0.975346
994		12		87	0.992554
995			12	87	0.992554
996		87		12	0.992554
997		77	11	11	0.968132
999	66	11		22	0.999999
1000		22		77	0.999999
1001	77		22		0.999999
1002		11		88	0.923564
1003		11	11	77	0.968132
1008		9	72		0.999994
1010			90	10	0.90298
1011			90	10	0.90298
1013	90	10			0.90298
1015			90	10	0.90298
1017		85	3	3	0.997433
1018		92		7	0.999602
1019	7		88	3	0.998862
1020		92	7		0.999602
1021	92			7	0.999602
1023	3			85	1.0
1024	7	7	85		0.997433
1028			7	92	0.999602
1029		7		92	0.999602
1031	92		7		0.999602
1033	7			92	0.999602
1200		7		92	0.999602
1204	89	3	7		0.998606
1205	92		7		0.999532
1206	89	7		3	0.998606
1213		93	6		0.99903
1214	3		6	90	0.996531

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain