SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene11995

Length: 775 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene11995

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6783	44/44

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc finger, RING-type [Medicago truncatula]	-	-	9.0e-39	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	e3 ubiquitin-protein ligase atl6-like	-	-	0.0	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	58%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
191	85	14			0.993533
192		14	14	71	0.984337
195	85			14	0.993533
202	66		22	11	0.999999
203			66	33	1.0
204		22	77		0.999999
206		77		22	0.999999
207	22		77		0.999999
208		88		11	0.923564
211	11			88	0.923564
212		77	22		0.999999
213		88		11	0.923564
214		11		88	0.923564
215	77		22		0.999999
217	22			77	0.999999
220	88		11		0.923564
225		15		84	0.999986
227	76		7	15	0.999983
228	76			23	1.0
230	84		15		0.999986
231	76	15			0.999983
233		84		15	0.999986
235	15			84	0.999986
334		85		3	1.0
335	85	3		10	1.0
338		10	89		1.0
340		3	85	11	1.0
345	84		3	11	1.0
346	84	15			1.0
347	11			88	1.0
348		10	89		1.0
359		5	91		0.995912
365	5	94			0.998894
366	94	5			0.998894
367		8	91		1.0
368	90			9	1.0
370	93		6		0.999153
371	93		6		0.999153
372		6		93	0.999153
374		93	6		0.999153
375	93			6	0.999153
379	93	6			0.999153
380			93	6	0.999153

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain