SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene11955

Length: 1534 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene11955

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21876	65/66

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative (Fragment) n=1 Tax=Ricinus communis RepID=B9T9S4_RICCO	-	-	50%
FL-Next	sp=Probable receptor-like protein kinase At4g39110; Arabidopsis thaliana (Mouse-ear cress).	-	-	44%
Blast2go	receptor-like protein kinase	-	-	66%

Source	GOs	Term	Type	Identity
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	66%
Blast2go	regulation of unidimensional cell growth	GO:0051510	Biological Process	66%
Blast2go	post-embryonic development	GO:0009791	Biological Process	66%
Blast2go	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	66%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	66%
Blast2go	chloroplast	GO:0009507	Cellular Component	66%
Blast2go	plasma membrane	GO:0005886	Cellular Component	66%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Isopenicillin N synthase, conserved site	IPR002057	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Peptidase S16, lon N-terminal	IPR003111	-	-
Sma3	Protein of unknown function DUF604	IPR006740	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9T020

Fln msg: Distance to subject end: 566 aas, your sequence is shorter than subject: 290 - 878

Fln protein: MISPRMGTLPILSWKGKLVLCIWGFLAAQSLSAFTPTDNYLIDCGASKNTTVEGQIFEADSYSSSLLSTSQDILATVQSANVPSDLYLTARIFTQRSSYTFQINLQGWHWVRLYFYPVPHGSYDLKSAIFSVTTDQFVLLHNFSINTDAKSTLYLFKEYLINVASDSLTLNFAPTGNSLAFINAIEVVSVPDELLSNQPVTLPAISSFVGLSGYALETAYRINVGGTLVTPINDTLGRTWVPDQSYLTSSGTAKSVSVLASSIKYTTTVTSEIAPNPVYATADEMANANV

Protein Length: 291

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTCGGTTAAGTGCGAGATAAGGCAATGGGGGCTTGATTGATACTTTGGATTTTGTATTCATGTCCCTTGGTATGTGGGTTCTGATTTAGAACAATCTAAATCTGGATTCACATGCAGGCATTGATAATAGTATTGGGCATTGCGAAATTTTGTGTGTACATCTTAGGAGATTGGGTTCAGGGTCCATCCCCATTGTCATATTGCAGTTAGGCTTTTTGTAGTTTATGATTGAAGGACACCATGATCTGAATCTTATTTTATTCTTGTTCCTTGAAAAACATTCAGGCCTGGTTTGAGTTGCATTGCTAGGGTGTTGGTACGTCCGTCTGCACAATCAGTGCTCGTTACGGTGGTTGGGGATATTGATGTGTTTGCAGAGAGGGTGCCCATTTCCAAAACAGGCCTTTCAGGGATATTGTCTGCAAAGCATTTGACAAAAGGGCTTCCGTGCTGGGTTTTTGGTTACCCAAATAGTGCAGACATTGTTCAAATTGGCCAAACATCGGAATTCAAGCTGCCAACTGTTGGCATCTCCGAAGACTTTGTATCTAGAGCAACAGGCTGGAGGGTTTCTGTTGCCTGGTCTGGGATACTAGGGGAGAGGAGGAAAAATTGAGAGTAGTAGTTCTCGACAAT_-_ATGATCAGTCCGAGGATGGGCACCCTGCCCATCCTCTCGTGGAAGGGGAAACTTGTGCTCTGTATATGGGGTTTTCTAGCTGCTCAATCTCTATCTGCCTTCACTCCAACAGACAATTACTTAATTGATTGCGGCGCATCAAAAAACACCACCGTTGAAGGGCAGATCTTTGAGGCGGATTCGTACTCATCATCCCTTCTTTCCACAAGCCAGGATATCCTGGCCACTGTTCAGAGCGCCAACGTTCCTTCGGATCTCTATTTGACAGCTAGAATCTTTACTCAGCGCTCCTCTTACACCTTCCAAATTAATCTGCAAGGCTGGCACTGGGTACGTCTGTATTTCTATCCTGTTCCACACGGTAGCTATGATCTTAAATCTGCAATATTTTCTGTTACAACAGATCAATTCGTTCTCTTGCACAACTTCAGCATCAACACAGATGCAAAGAGTACTCTGTATTTGTTTAAGGAGTACCTCATCAATGTGGCCTCTGATAGCTTGACATTGAACTTTGCTCCTACGGGCAATTCACTTGCATTCATAAATGCCATCGAGGTTGTTTCAGTTCCAGATGAGTTGTTGTCTAACCAGCCTGTTACCTTACCTGCTATTTCTTCTTTTGTTGGGCTCTCTGGATATGCTTTGGAGACAGCATACAGGATCAATGTTGGGGGTACACTGGTCACGCCTATCAATGACACTCTTGGTAGAACTTGGGTACCTGATCAGAGTTATTTGACTTCTAGTGGTACTGCCAAATCTGTCAGTGTCCTTGCCAGCAGCATTAAGTACACCACAACAGTCACTTCAGAGATTGCCCCTAACCCTGTCTATGCCACAGCAGATGAGATGGCAAATGCAAATGTGAC

Fln Alignment:

Contig11955___PRMGTLPILSWKGK----LVLCIWGFLAAQSLSA-----------FTPTDNYLIDCGA-SKNTTVEGQIFEADXXXXXXXXXXQDI-LATVQSANVPSDLYLTARIFTQRSSYTFQINLQGWHWVRLYFYPVPHGSYDLKSAIFSVTTDQFVLLHNFSI-NTDAKSTLYLFKEYLINVASDSLTLNFAPTGNSLAFINAIEVVSVPDELLSNQPVTLPAISSFVGLSGYALETAYRINVGGTLVTPINDTLGRTWVPDQSYLTSSGTAKSVSVLASSIKYTTTVTSEIAPNPVYATADEMANA
Q9T020________________PNIFTVLVIDFSSKPSMALLLAILLFLSGPSASAVAAAAVGPATGFKPADDILIDCGSKSSSKTPDGRVFKSDQETIQYIEAKEDIQVSAPPSDKVASPIYLTARIFREEATYKFHLTRPGWHWVRLHFLAFPNDKFDLQQATFSVLTEKYVLLHNFKISNNNNDSQAAVQKEYLVNMTDAQFALRFRPMKSSAAFINAIEVVSAPDELISDSGTALFPVIGFSGLSDYAYQSVYRVNVGGPLIMPQNDTLGRTWIPDKEFLKDENLAKDVKTTPSAIKYPPEVTPLIAPQTVYATAVEMANS

SNPs (tot: 91)

Position	A %	C %	G %	T %	Probability
50	60		40		1.0
51	60			40	1.0
52		40		60	1.0
54			60	40	1.0
56	40		60		1.0
57		40	60		1.0
62	60		40		1.0
63		40		60	1.0
66	60			40	1.0
67		40		60	1.0
71		40		60	1.0
72	40			60	1.0
306	66		33		1.0
308		33		66	1.0
309		66	33		1.0
310	66			33	1.0
312	33		66		1.0
319			33	66	1.0
321		33	66		1.0
324		33		66	1.0
326		33	66		1.0
327	33	66			1.0
350		85		14	0.993533
352		14		85	0.993533
355			85	14	0.993533
356		85	14		0.993533
357	85		14		0.993533
359	85			14	0.993533
360	85		14		0.993533
364		14	85		0.993533
366		14	85		0.993533
367	14	85			0.993533
406	88	11			0.923564
408		11	88		0.923564
412	12	87			0.992554
418			14	85	0.993533
419		85	14		0.993533
422	83			16	0.994512
423	83		16		0.994512
424	83			16	0.994512
427		16	83		0.994512
428			85	14	0.993533
430	14	85			0.993533
566	75			25	1.0
713	66	33			0.997452
727		33		66	0.997452
730		33	66		0.997452
731			66	33	0.997452
732		33	66		0.997452
733	33		66		0.997452
740	80	20			0.995493
746	20			80	0.995493
748	80	20			0.995493
749	80			20	0.995493
751		80	20		0.995493
752			20	80	0.995493
755	80		20		0.995493
758		20		80	0.995493
759			80	20	0.995493
761	20	80			0.995493
819		11		88	0.923564
821	77		11		0.968132
822	77	11		11	0.968132
823			88	11	0.923564
824	11		88		0.923564
825		11	77	11	0.968132
827	88			11	0.923564
828		11	77	11	0.968132
829	88		11		0.923564
830			11	88	0.923564
833			11	88	0.923564
835		11	88		0.923564
837		11	88		0.923564
838			88	11	0.923564
840	11		88		0.923564
980	14			85	0.993533
981		14	85		0.993533
990			85	14	0.993533
1108			75	25	0.996473
1193	20		80		0.999996
1206	93	6			0.999264
1207			6	93	0.999264
1210	93		6		0.999364
1213	93	6			0.999453
1218		93		6	0.999453
1219	93		6		0.999453
1341			90	10	0.90298
1391		88		11	0.923564
1394	88	11			0.923564
1502	66			33	0.997452
1503		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain