SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene11946

Length: 1014 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene11946

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23725	50/54

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock 70 kDa protein n=3 Tax=rosids RepID=HSP70_SOYBN	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	heat shock	-	-	92%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Heat shock protein 70	IPR013126	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXU2

Fln msg: Distance to subject end: 360 aas, your sequence is shorter than subject: 290 - 651

Fln protein: MASSEGKAIGIDLGTTYSCVGVWHHDRVEIIPNDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDAPVQNDMKLWPFKVLPGPGDKPMIEVSYKGEKKQFSPEEISSMVLSKMREIAEAFLGQSVKNAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDKKASSTREKNVLIFDLGGGTFDVSILTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHRKDISGNARALRRLRTACERAKRTLSSTTQTTIEID

Protein Length: 291

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTCAGTTCGACAGCGTTGTTTTGCTAAGTGAGCAAGGAATACAGAACGTCTTGTTTCAATTTTCTTGTGTATTCGTGTGGTTTGTTTTGATTCTGCTGTGATTTGAAGTTCTGACG_-_ATGGCTAGTAGCGAAGGGAAGGCGATTGGAATCGATCTGGGAACAACCTACAGTTGCGTGGGTGTTTGGCACCACGACCGTGTGGAAATAATTCCCAATGATCAAGGTAACAGAACGACTCCTTCCTATGTTGCTTTTACTGATACCGAGCGTCTAATTGGGGACGCTGCCAAGAATCAAGTGGCCATGAATCCCCAGAACACGGTCTTTGACGCTAAAAGATTGATCGGCAGGCGCTTCAGCGATGCCCCTGTGCAAAACGACATGAAGCTCTGGCCTTTTAAAGTATTACCTGGCCCTGGGGATAAGCCTATGATTGAGGTCAGCTACAAAGGCGAGAAGAAGCAATTCTCTCCGGAAGAAATTTCGTCTATGGTCCTTTCCAAGATGAGGGAGATTGCAGAGGCTTTTCTTGGTCAGAGTGTAAAGAATGCTGTGGTTACTGTTCCTGCCTATTTCAATGACTCGCAGAGGCAGGCGACCAAGGATGCTGGTCTCATTGCTGGCTTAAATGTGTTGAGGATTATTAATGAGCCTACAGCTGCTGCCATTGCTTATGGGCTCGACAAGAAGGCCAGTTCTACTAGAGAAAAGAATGTGCTCATCTTTGATTTGGGAGGAGGAACGTTCGATGTCTCAATTCTGACTATTGAAGAGGGAATCTTCGAAGTGAAGGCCACCGCCGGAGATACTCACTTGGGAGGCGAGGATTTTGATAACAGAATGGTGAATCACTTTGTGCAGGAATTCAAAAGAAAGCACAGAAAAGACATCAGCGGGAACGCCAGAGCTCTTCGCAGGCTGAGAACAGCATGTGAGAGGGCAAAAAGAACGCTCTCTTCTACTACACAGACAACGATTGAGATTGATTC

Fln Alignment:

Contig11946___MASSEGKAIGIDLGTTYSCVGVWHHDRVEIIPNDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDAPVQNDMKLWPFKVLPGPGDKPMIEVSYKGEKKQFSPEEISSMVLSKMREIAEAFLGQSVKNAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDKKASSTREKNVLIFDLGGGTFDVSILTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHRKDISGNARALRRLRTACERAKRTLSSTTQTTIEID
A9NXU2________________MATSEGKAIGIDLGTTYSCVGVWQHDRVEIIPNDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRITDASVQSDMKLWPFKVLSGPGDKPMIEVIYKGEKKQFSPEEISSMVLIKMREIAEAFLGQTVKNAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDKKATSTKEKNVLIFDLGGGTFDVSILTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNARALRRLRTACERAKRTLSSTTQTTIEID

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
103		6	93		0.999364
105	3	6	90		0.997952
181		9	90		1.0
183			90	9	1.0
184	90	9			1.0
185	90		9		1.0
186		90		9	1.0
187	90		9		1.0
193		90		9	1.0
194	90		9		1.0
196		9		90	1.0
200	9		90		1.0
201		9		90	1.0
202			90	9	1.0
203		9	90		1.0
204	9		90		1.0
480	90			10	0.90298
482	90			10	0.90298
483	90	10			0.90298
485	90	10			0.90298
499		20	80		1.0
501	80			20	1.0
502	80	20			1.0
504	80			20	1.0
505	80		20		1.0
507		20		80	1.0
508		20		80	1.0
510		80		20	1.0
512			20	80	1.0
515	80		20		1.0
518	20		80		1.0
519		20	80		1.0
522	20	80			1.0
600		14		85	0.999981
601			14	85	0.999981
729	86	13			0.999973
731	86			13	0.999973
734	85	14			0.999981
735	85			14	0.999981
736	85			14	0.999981
738	78		14		0.999974
739	85	14			0.999981
745	14			85	0.999981
751	15			84	0.999986
901	88		11		0.923564
902		11	88		0.923564
903	11	88			0.923564

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain