SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene11938

Length: 1036 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene11938

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27008	13/24
SustainPine v2.0	sp_v2.0_unigene76904	8/24

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AP2/ERF domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=A9PLA3_POPTR	-	-	5.0e-29	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Blast2go	ap2 erf domain-containing transcription factor	-	-	0.0	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	AP2/ERF domain	IPR001471	-	0.0	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
157	38	47	14		1.0
160		47		52	1.0
161	9	52	38		1.0
162	61			38	1.0
163	61		38		1.0
165		38		61	1.0
170			38	61	1.0
191			61	38	1.0
199		38		61	1.0
222			40	60	1.0
223		40		60	1.0
224	60			40	1.0
242			42	57	1.0
266		44	55		1.0
278		55	44		1.0
282	44	55			1.0
283		44		55	1.0
324	50		50		1.0
325			50	50	1.0
454		50	50		1.0
626			25	75	0.996473
633	75	25			0.996473
634		25	75		0.996473
635	75			25	0.996473
636		75		25	0.996473
641		75		25	0.996473
643			75	25	0.996473
645	25		75		0.996473
646		25		75	0.996473
647			75	25	0.996473
649	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain