SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene11931

Length: 595 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene11931

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16297	23/24

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative gibberellin-regulated protein [Arabidopsis thaliana] gb\|AAS47605.1\| At1g74670 [Arabidopsis thaliana] gb\|AEE35620.1\| putative gibberellin-regulated protein [Arabidopsis thaliana]	-	-	8.0e-33	60%
FL-Next	tr=Gasa5 like protein; Pinus pinaster (Maritime pine).	-	-	0.0	95%
Blast2go	gibberellin induced protein	-	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	response to sucrose stimulus	GO:0009744	Biological Process	80%
Blast2go	response to glucose stimulus	GO:0009749	Biological Process	80%
Blast2go	response to fructose stimulus	GO:0009750	Biological Process	80%
Blast2go	response to karrikin	GO:0080167	Biological Process	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Gibberellin regulated protein	IPR003854	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
162		16	83		0.994512
165	83			16	0.994512
170		83		16	0.994512
171	83		16		0.994512
175	62	25		12	1.0
177			62	37	1.0
179		12	87		0.992554
180			62	37	1.0
181		75	25		1.0
182	37	62			1.0
185	75			25	1.0
186	75			25	1.0
191		75		25	1.0
192		75	25		1.0
193		12		87	0.992554
194		25		75	1.0
195	25		75		1.0
196	75	25			1.0
197			75	25	1.0
502			88	11	0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
323	335	TGAG TGAG TGAG T	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain