SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene11913

Length: 1795 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene11913

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16416	149/157
SustainPine v2.0	sp_v2.0_unigene81975	3/157
SustainPine v2.0	sp_v2.0_unigene81977	1/157

Source	Descriptions	Term	Type	Identity
AutoFact	Glutamine synthetase n=2 Tax=Pinaceae RepID=Q9ZS52_PINSY	-	-	90%
FL-Next	sp=Glutamine synthetase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	glutamine synthetase	-	-	94%

Source	InterPros	Term	Type	Identity
Sma3	Glutamine synthetase, beta-Grasp	IPR008147	-	-
Sma3	Glutamine synthetase/guanido kinase, catalytic domain	IPR014746	-	-
Sma3	Glutamine synthetase, catalytic domain	IPR008146	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSW2

Fln msg:

Fln protein: MSLLTDLINLDLSDVTEKIIAEYIWIGGSGMDIRSKARTLSHPVTDPKDLPKWNYDGSSTGQAPGKDSEVILYPQAIFRDPFRRGNNILVICDTYTPAGEPIPTNKRANAAKIFSHPDVVVEEPWYGIEQEYTLLQKDVNWPLGWPVGGYPGPQGPYYCGTGADKAYGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPTVGISSGDQVWAARYLLERITEVAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMREEGGIKVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEREGKGYFEDRRPASNMDPYIVTSMIAETTILLK*

Protein Length: 357

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTCGTGACCTTGGCTGTCACTCAATCTTCTTTCATTGGTTTCTATAAATTCTTCCTCAGGTTGGGGTTGCCCTTTGCATCAATTGCTATAAATTCTTATTTCAGTGGCCTTTATTTCGAAATAGCAGATCAAAGGCCTTCACTGCTTGCAGAATTATACTTGTGCGGGAGTCTGTGATTTTGTTGTACATCCAAG_-_ATGTCTCTACTGACGGATTTGATCAACTTGGACCTCTCTGATGTCACTGAGAAGATCATCGCTGAGTACATATGGATCGGAGGCTCTGGCATGGATATCCGCAGCAAGGCCAGGACCTTATCTCACCCAGTTACGGACCCCAAAGATCTACCCAAGTGGAATTATGATGGATCCAGTACTGGACAGGCTCCTGGAAAGGATAGTGAAGTCATCCTTTACCCTCAGGCTATCTTCAGGGATCCATTCCGCAGGGGGAACAACATCTTGGTGATTTGTGATACATATACCCCAGCTGGAGAACCTATTCCTACTAACAAGAGAGCAAATGCTGCAAAAATATTTAGCCATCCCGATGTTGTTGTCGAGGAACCATGGTACGGGATTGAACAAGAATACACTCTTCTGCAAAAGGATGTGAATTGGCCTCTTGGATGGCCCGTAGGTGGTTACCCTGGTCCTCAGGGTCCTTATTATTGTGGAACTGGAGCAGACAAAGCCTACGGCCGTGATATCGTCGATGCCCACTATAAGGCTTGCCTGTATGCAGGAATCAACATTAGTGGCATCAATGGAGAAGTCATGCCCGGTCAATGGGAATTTCAAGTTGGCCCGACGGTTGGTATTTCATCTGGTGATCAAGTCTGGGCTGCACGTTACCTTCTTGAGAGAATCACAGAAGTGGCTGGTGTTGTCCTCTCATTTGACCCCAAACCCATTCAGGGTGATTGGAATGGTGCTGGTGCTCACACTAACTACAGTACGAAATCAATGAGAGAAGAAGGGGGAATTAAAGTGATCAAAAAGGCCATTGAAAAGTTAGGGTTGAGGCATAAGGAACACATTGCTGCCTATGGAGAGGGCAACGAGAGGCGTTTGACTGGCCGACATGAGACAGCAGACATAAACACATTTTCATGGGGAGTTGCAAATCGTGGAGCTTCTATTCGAGTTGGCCGTGACACGGAACGTGAAGGCAAAGGGTACTTCGAAGACCGCAGGCCAGCTTCCAACATGGACCCCTATATTGTAACATCTATGATTGCTGAGACAACCATCCTTTTGAAGTGA___GAGTAACATTGTTTACTGAATGAATAAAGATGCCGATACGATTGAAGTGTTCTTGATGCTAGTCAAATTGCGAAGGGATCCCCAATTGTTTGTGGGGGATATTCTCATTTGAATTTCTCTCTGTGCCTGAAGTATTTCCCCTATTTCTGTTAATAAGAACATTCTAGAAATAGGACTTGAGATTTAGGGTGCATTATATTCAGTGTCTAGTTTGTCATTCAGATTTGCATTATTCCATGACTCTGATATGATTGGTGTGCAGTTGAATTTAATGAATTCAGAAGTTCTTTTATTGCTTGCGAACGTTGGAGTTATTTCTTGCTGTCTTCTACTTTTTGGAAACATTGACAGAGCTTGGAAGGCTCTTTGTTTCTTATGGTTAAGTAATGTGACAAGAAATCCTTAAGCAGAACATCTGAGGGGGTTTTCCTGGGTTATAATTCCCAAAATATGATAAAAGAAATTAACTAAATCTCTTTCTACTTCTTGTTTGAGATGTAGTTCCAAAT

Fln Alignment:

Contig11913___MSLLTDLINLDLSDVTEKIIAEYIWIGGSGMDIRSKARTLSHPVTDPKDLPKWNYDGSSTGQAPGKDSEVILYPQAIFRDPFRRGNNILVICDTYTPAGEPIPTNKRANAAKIFSHPDVVVEEPWYGIEQEYTLLQKDVNWPLXXXXXXXXXXXXXXXXXXXADKAYGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPTVGISSGDQVWAARYLLERITEVAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMREEGGIKVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEREGKGYFEDRRPASNMDPYIVTSMIAETTILLK
A9NSW2________________MSLLTDLINLNLSDVTEKIIAEYIWIGGSGTDIRSKARTLSHEVSDPKDLPKWNYDGSSTGQAPGKDSEVIIYPQAIFRDPFRRGKNILVICDTYTPAGEPIPTNKRANAAKIFSHPDVVAEEPWFGIEQEYTLLQKDVQWPLGWPIGGYPGPQGPYYCGTGADKAYGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPTVGISSGDQVWAARYILERITEVAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMREEGGIKVIKKAIEKLGLRHKEHISAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEREGKGYFEDRRPASNMDPYIVTSMITETTILLK

SNPs (tot: 109)

Position	A %	C %	G %	T %	Probability
48	16	8		75	0.99999
50	16			83	0.999991
88		4	92	2	0.98868
89		4	95		0.997494
93	4	95			0.997494
118		96		3	0.993591
119			3	96	0.993591
120		11	5	82	1.0
121	84	3	11		1.0
122		3		96	0.991825
123			16	83	1.0
124	11			88	1.0
126	85	11	1		1.0
127		5	83	11	1.0
131	3	94			0.951749
132	1	88		9	1.0
133		1	9	88	1.0
135		11	1	87	1.0
136	96	3			0.991825
137	1	9		88	1.0
139		9		90	1.0
140	9	90			1.0
143	96			3	0.991825
243	90		9		1.0
244	90			9	1.0
246			9	90	1.0
257			8	92	1.0
259	90	9			1.0
290	97		2		0.941605
293		2	97		0.944212
294	97	2			0.944212
296		97		2	0.944212
299	97			2	0.944212
301			97	2	0.944212
303	2			97	0.946738
565	87		12		0.999964
568		87	12		0.999964
569		87		12	0.999964
572		12		87	0.999964
573		12	87		0.999964
577		12		87	0.999964
586	87	12			0.999964
587	87			12	0.999964
589	12	87			0.999964
659	90			10	0.90298
663		13	86		0.999973
675		85		14	0.999981
777	87	12			0.992554
780		12	87		0.992554
782		87		12	0.992554
783	87		12		0.992554
784	12			87	0.992554
786	87	12			0.992554
787	87			12	0.992554
791	87			12	0.992554
793	87	12			0.992554
795		12	87		0.992554
801		87		12	0.992554
802		87		12	0.992554
908		20		80	0.995493
912	20	80			0.995493
1026		66		33	1.0
1030		16		83	0.994512
1031	16		83		0.994512
1107	83		16		0.994512
1111	83			16	0.994512
1116		16	83		0.994512
1117		83		16	0.994512
1118	83			16	0.994512
1120	83		16		0.994512
1122	83			16	0.994512
1123			16	83	0.994512
1124	83			16	0.994512
1125	83	16			0.994512
1128	83			16	0.994512
1136	75		25		1.0
1138		25	75		1.0
1140			75	25	1.0
1144		25	75		1.0
1148		75	25		1.0
1149	75	25			1.0
1150	75			25	1.0
1151	75		25		1.0
1154		25	75		1.0
1156		25	75		1.0
1157	25		75		1.0
1234	66	4	14	4	1.0
1236	4	14	80		1.0
1238	85			9	0.999726
1239		90	9		0.999872
1240	9	85	4		0.999726
1244	85		4	9	0.999726
1245			9	90	0.999872
1246	90		9		0.999872
1247		9		90	0.999872
1252	90			9	0.999872
1254	91		8		0.999807
1258	91		8		0.999807
1269		8	91		0.999807
1279		92	8		0.999718
1281		8		92	0.999718
1282			8	92	0.999718
1286	91	8			0.999766
1287			91	8	0.999766
1290	91		8		0.999766
1291		8	91		0.999766
1292	91			8	0.999766
1296	91			8	0.999766
1375	91	8			0.999807

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain