SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene11900

Length: 763 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene11900

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7818	55/58

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit alpha type n=1 Tax=Picea sitchensis RepID=A9NKR6_PICSI	-	-	94%
FL-Next	sp=Proteasome subunit alpha type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	proteasome subunit alpha	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Threonine endopeptidases.	EC:3.4.25.-	-	0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	92%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	92%
Blast2go	threonine-type endopeptidase activity	GO:0004298	Molecular Function	92%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	92%
Blast2go	vacuole	GO:0005773	Cellular Component	92%
Blast2go	proteasome core complex, alpha-subunit complex	GO:0019773	Cellular Component	92%
Blast2go	nucleus	GO:0005634	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Proteasome, alpha-subunit, N-terminal domain	IPR000426	-	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	-

Full-Lengther Next Prediction

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
127			66	33	0.997452
132	66			33	0.997452
135		12		81	0.999943
136	18	81			1.0
137	12	6	81		0.999943
139			81	18	1.0
140	81			18	1.0
141		81	18		1.0
142		81	18		1.0
143	12	6		81	0.999943
144			12	87	0.999964
153		81	12		0.999943
154			12	87	0.999964
156	87	12			0.999964
316	93	6			0.999453
318	93		6		0.999453
324	93			6	0.999453
326	93		6		0.999453
327		6	93		0.999453
328	93			6	0.999453
330		6	93		0.999453
332		6	93		0.999453
333			93	6	0.999453
335	6			93	0.999453
397	95	4			0.996252
400		4		95	0.996252
404	95	4			0.996599
407	95		4		0.997218
411			90	9	1.0
413			92	7	0.999532
414		70		12	1.0
415		22		72	1.0
423			5	84	0.999846
603		60		40	1.0
609		11		88	0.923564
610	88			11	0.923564
611	88			11	0.923564
612	88		11		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain