SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene11836

Length: 610 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene11836

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26728	116/164
SustainPine v2.0	sp_v2.0_unigene60651	36/164
SustainPine v2.0	sp_v2.0_unigene62468	7/164
SustainPine v2.0	sp_v2.0_unigene80714	2/164

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Hydrophobic protein RCI2A [Arabidopsis thaliana] sp\|Q9ZNQ7.1\|RCI2A_ARATH RecName: Full=Hydrophobic protein RCI2A; AltName: Full=Low temperature and salt-responsive protein LTI6A gb\|AAF26090.1\|AC012393_16 low temperature and salt responsive protein LTI6A [	-	-	2.0e-11	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	low temprature induced-like protein	-	-	2.31835e-25	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	hyperosmotic salinity response	GO:0042538	Biological Process	2.31835e-25	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteolipid membrane potential modulator	IPR000612	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
41	90			10	0.90298
42	90		10		0.90298
99	17		82		1.0
143			97	2	0.975753
156		51		48	1.0
160		2	97		0.979771
189	50			49	1.0
192		49	50		1.0
248	2	97			0.924243
252	57			42	1.0
253		57		42	1.0
257		69	30		1.0
264	57		42		1.0
300	35		64		1.0
308	5	0	94		1.0
314	59		40		1.0
322		43		56	1.0
323	72		26	1	1.0
324	1			92	1.0
350		17		82	1.0
362		47	52		1.0
377	92		7		0.999999
410		57		42	1.0
415		55		44	1.0
507		50		50	1.0
513	40	60			1.0
541	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain