SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene11726

Length: 336 nt

UniGene Fasta

>uagpf_v2_unigene11726
CGTCGTGACCTTGGCTGTCACTCATCTAAAGCTGGCTGTACTCTTATATTTCTCAATCAAATTCGACATAAGATTGGTGTATTCTATGGAAGTCCGGAAGTTACTAGTGGGGGCATTGCTTTAAAATTCTTTGCGTCACTCCGTCTTGAAATCCGTTCTGCTGGGAAAATAAAGTCTCTCAAAGGAGATGAAGACATTGGAGTAAGAACTCGTGTAAGAGTGCAGAAAAGCAAGGTTTCAAGGCCCTATAAACAAGCAGAGTTTGATATTATTTTTGGTGAAGGTGTGAACAGGCTGGGATGCATTTTGGATAGTTCAGAAATGCTGGATATTGTT

Ace file of the UniGene uagpf_v2_unigene11726

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28372	3/4

Source	Descriptions	Term	Type	Identity
AutoFact	DNA repair protein recA, putative [Oryza sativa Japonica Group]	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	dna repair protein	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	0.0	88%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	88%
Blast2go	Thiamine metabolism	00730	88%
Blast2go	Metabolic pathways	01100	88%

Source	GOs	Term	Type	Identity
Blast2go	DNA metabolic process	GO:0006259	Biological Process	88%
Blast2go	cellular response to stress	GO:0033554	Biological Process	88%
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	88%
Blast2go	DNA binding	GO:0003677	Molecular Function	88%

Source	InterPros	Term	Type	Identity
Sma3		IPR001553	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	DNA recombination and repair protein RecA	IPR013765	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRS8

Fln msg: Distance to subject end: 77 aas, your sequence is shorter than subject: 112 - 454

Fln protein: RRDLGCHSSKAGCTLIFLNQIRHKIGVFYGSPEVTSGGIALKFFASLRLEIRSAGKIKSLKGDEDIGVRTRVRVQKSKVSRPYKQAEFDIIFGEGVNRLGCILDSSEMLDIV

Protein Length: 113

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTAAAGCTGGCTGTACTCTTATATTTCTCAATCAAATTCGACATAAGATTGGTGTATTCTATGGAAGTCCGGAAGTTACTAGTGGGGGCATTGCTTTAAAATTCTTTGCGTCACTCCGTCTTGAAATCCGTTCTGCTGGGAAAATAAAGTCTCTCAAAGGAGATGAAGACATTGGAGTAAGAACTCGTGTAAGAGTGCAGAAAAGCAAGGTTTCAAGGCCCTATAAACAAGCAGAGTTTGATATTATTTTTGGTGAAGGTGTGAACAGGCTGGGATGCATTTTGGATAGTTCAGAAATGCTGGATATTGTT

Fln Alignment:

Contig11726___SKAGCTLIFLNQIRHKI---GVFYGSPEVTSGGIALKFFASLRLEIRSAGKIKSLKGDEDIGVRTRVRVQKSKVSRPYKQAEFDIIFGEGVNRLGCILD
B8LRS8________________SRSQTLLIFINQVRSKLSSFGGFGGPSEVTAGGNALKFYASIRLNIRRTGLLK--RGDETFGSQILVKVAKNKLAPPFKTAEFEIEFGRGISCEAEILD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain