SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene11600

Length: 659 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene11600

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20978	11/12

Source	Descriptions	Term	Type	Identity
AutoFact	WD40 repeat protein [Ipomoea purpurea] dbj\|BAE94399.1\| WD40 repeat protein [Ipomoea nil]	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	protein	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	photoperiodism, flowering	GO:0048573	Biological Process	0.0	86%
Blast2go	entrainment of circadian clock by photoperiod	GO:0043153	Biological Process	0.0	86%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
13		33	66		0.997452
15		66		33	0.997452
16		33		66	0.997452
19		66	33		0.997452
22		33		66	0.997452
23		66		33	0.997452
24	66			33	0.997452
27	66	33			0.997452
29	66		33		0.997452
30	66			33	0.997452
33	33	66			0.997452
92	33		66		0.997452
156	90	10			0.90298
158		90		10	0.90298
159	90	10			0.90298
162			10	90	0.90298
163	10	90			0.90298
164		10		90	0.90298
165		10	90		0.90298
168			10	90	0.90298
169		90	10		0.90298
170	90	10			0.90298
171	90			10	0.90298
172	90		10		0.90298
174		10		90	0.90298
175	10		90		0.90298
176		10		90	0.90298
178		10		90	0.90298
179	10		90		0.90298
299		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain