SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene11586

Length: 828 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene11586

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22225	14/14

Source	Descriptions	Term	Type	Identity
AutoFact	WD-repeat protein GhTTG2 [Gossypium hirsutum] gb\|AAM95644.1\| WD-repeat protein GhTTG2 [Gossypium hirsutum]	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	protein	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	photoperiodism, flowering	GO:0048573	Biological Process	92%
Blast2go	entrainment of circadian clock by photoperiod	GO:0043153	Biological Process	92%
Blast2go	nucleus	GO:0005634	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3		IPR019782	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-

Full-Lengther Next Prediction

SNPs (tot: 72)

Position	A %	C %	G %	T %	Probability
155		20	80		0.995493
159	80		20		0.995493
163	80			20	0.995493
164			80	20	0.995493
165	80		20		0.995493
167	80	20			0.995493
171	20			80	0.995493
172		20	80		0.995493
173	80			20	0.995493
174	80	20			0.995493
175	20		80		0.995493
216	80	20			0.995493
219	80	20			0.995493
220	80		20		0.995493
223	80		20		0.995493
225		20		80	0.995493
226	80	20			0.995493
227	80			20	0.995493
228	80			20	0.995493
229			20	80	0.995493
230	66	16	16		0.988813
231	66	16	16		0.988813
233	66	16	16		0.988813
234	66		16	16	0.988813
235		16		83	0.994512
236	83		16		0.994512
237	83	16			0.994512
239	66	33			1.0
240	16	83			0.994512
241	83			16	0.994512
245		16	83		0.994512
246			83	16	0.994512
249	16		83		0.994512
250		16	83		0.994512
251			83	16	0.994512
263			14	85	0.993533
268		14	85		0.993533
269		14	85		0.993533
270	85			14	0.993533
271	85			14	0.993533
274	85	14			0.993533
275	85			14	0.993533
276		85	14		0.993533
277		85		14	0.993533
281	85	14			0.993533
283		14		85	0.993533
284	14			85	0.993533
314		11	88		0.923564
315			11	88	0.923564
316		11		88	0.923564
317		11	88		0.923564
319	88			11	0.923564
321	77	11			0.968132
322	88	11			0.923564
323		11		88	0.923564
324		88		11	0.923564
325			11	88	0.923564
326	77		11		0.968132
327	77	11			0.968132
329	77		22		0.999999
330		77	11	11	0.968132
331	77	22			0.999999
332	55		33	11	1.0
333		11	88		0.923564
337		11	77		0.968132
338			77	11	0.968132
339		11		88	0.923564
340	11		88		0.923564
695			25	75	0.996473
710			66	33	0.997452
711	66			33	0.997452
712		33	66		0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
218	230	AATA AATA AATA A	13
226	238	AAT AAT AAT AAT A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain