SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene11559

Length: 496 nt

UniGene Fasta

>uagpf_v2_unigene11559
CGTCGTGACCTTGGCTGTCACTCAGATGAACGGGAGCGAGAGATGGAGGAGCTTCTTCAGTCGACAAATGAACAAAGAGCGAGCACCGTCCAAGTTCTTGAGAGTCTTTTAGGTAGTGAAAGGACAGCTAGAGCGGAGGCTAATGCTAGAGCTGAGGCACTTTCTCTGCAACTTCAGGCCACACAAGGAAAACTGGATGCTCTTCAACAGGAGTTGACTTCTGTCCGACTGAATGAAACAGCGTTAGATAACAAATTAAAGACTACTTCTCGGACTAAAAGAATGAGATCTGAAGAATGTGCTGGGGTGGACTCAGTGCAAGATATGGACATTGAAGTGGAGACTGTTAGGCAAAGAAAGAAAAGGAATACAACCAGTGAAAATGTATACAGCCCTGTGACGATGCCGGCAGAGGGAGGTTCAGTGATCAGGCCAGATGATGACAATAACTCCAGTGAAATGAAAGAACCACAAGATTATCTCAAATTCACAGTTC

Ace file of the UniGene uagpf_v2_unigene11559

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2110	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Interferon-induced guanylate-binding protein, putative n=1 Tax=Ricinus communis RepID=B9RB86_RICCO	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	immune response	GO:0006955	Biological Process	74%
Blast2go	GTPase activity	GO:0003924	Molecular Function	74%
Blast2go	GTP binding	GO:0005525	Molecular Function	74%
Blast2go	nucleolus	GO:0005730	Cellular Component	74%
Blast2go	chloroplast	GO:0009507	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Guanylate-binding protein, C-terminal	IPR003191	-	-
Sma3	Guanylate-binding protein, N-terminal	IPR015894	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LN28

Fln msg: Distance to subject end: 37 aas, your sequence is shorter than subject: 165 - 452

Fln protein: RRDLGCHSDEREREMEELLQSTNEQRASTVQVLESLLGSERTARAEANARAEALSLQLQATQGKLDALQQELTSVRLNETALDNKLKTTSRTKRMRSEECAGVDSVQDMDIEVETVRQRKKRNTTSENVYSPVTMPAEGGSVIRPDDDNNSSEMKEPQDYLKFTV

Protein Length: 166

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATGAACGGGAGCGAGAGATGGAGGAGCTTCTTCAGTCGACAAATGAACAAAGAGCGAGCACCGTCCAAGTTCTTGAGAGTCTTTTAGGTAGTGAAAGGACAGCTAGAGCGGAGGCTAATGCTAGAGCTGAGGCACTTTCTCTGCAACTTCAGGCCACACAAGGAAAACTGGATGCTCTTCAACAGGAGTTGACTTCTGTCCGACTGAATGAAACAGCGTTAGATAACAAATTAAAGACTACTTCTCGGACTAAAAGAATGAGATCTGAAGAATGTGCTGGGGTGGACTCAGTGCAAGATATGGACATTGAAGTGGAGACTGTTAGGCAAAGAAAGAAAAGGAATACAACCAGTGAAAATGTATACAGCCCTGTGACGATGCCGGCAGAGGGAGGTTCAGTGATCAGGCCAGATGATGACAATAACTCCAGTGAAATGAAAGAACCACAAGATTATCTCAAATTCACAGTTC

Fln Alignment:

Contig11559___DEREREMEELLQSTNEQRASTVQVLESLLGSXXXXXXXXXXXXXXLSLQLQATQGKLDALQQELTSVRLNETALDNKLKTTSRTKRMRSEECAGVDSVQDMDIEVETVRQRKKRNTTSENVYSPVTMPAEGGSVIRPDDDNNSSEMKEPQDYLKFTV
B8LN28________________DEREREMEELLQSTNEQRASTVQVLESLLGSERTARAEANARAEALSLQLQATQGKLDALQQELTSVRLNETALDNKLKTTSRSKRMRSEDCAGVDSVQDMDIEVETVRQRKKRNTSNENGYSPVTMPAEGGSVIMPDDDNNSSDMKEPQDYLKFTV

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
243			50	50	1.0
275		50	50		1.0
322	66	33			0.997452
323		33	66		0.997452
324	66			33	0.997452
327	66		33		0.997452
328		33		66	0.997452
329			66	33	0.997452
331	66			33	0.997452
334		33		66	0.997452
337	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain