SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene11549

Length: 308 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene11549
GCATATTGCTTCATGAATCAGGCCAATTCCCACTTATACTTGCTTTGTTGCAGAGCTTCTTTATGTAAGACATGGGAGCTTTTATACCTATGTTCTTCGGCAATGTGCCCTGGAACTGAAATAGCTTCTTGTCTTCTAGAATACATTCACGAGGCCATCAAAGCATTGGAAAATGATTCTCAATTGCAGACAGTGGTCTTGACTGCATGCAAGTCCCTCGAGCACTCTGTGAAAAATGGTACAAGACTGTGCGATTGAAAGCCTGTAGCATCATCATTAAATGTTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene11549 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20958	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MyTH4 domain containing protein	-	-	3.0e-06	32%
FL-Next	sp=Kinesin-like calmodulin-binding protein homolog; Oryza sativa subsp. japonica (Rice).	-	-	0.0	39%
Blast2go	kinesin-like calmodulin-binding protein homolog	-	-	2.41337e-12	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q7XPJ0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 996 aas, your sequence is shorter than subject: 86 - 1248

Fln protein: AYCFMNQANSHLYLLCCRASLCKTWELLYLCSSAMCPGTEIASCLLEYIHEAIKALENDSQLQTVVLTACKSLEHSVKNGTRLCD*

Protein Length: 87

Fln nts: GCATATTGCTTCATGAATCAGGCCAATTCCCACTTATACTTGCTTTGTTGCAGAGCTTCTTTATGTAAGACATGGGAGCTTTTATACCTATGTTCTTCGGCAATGTGCCCTGGAACTGAAATAGCTTCTTGTCTTCTAGAATACATTCACGAGGCCATCAAAGCATTGGAAAATGATTCTCAATTGCAGACAGTGGTCTTGACTGCATGCAAGTCCCTCGAGCACTCTGTGAAAAATGGTACAAGACTGTGCGATTGAAAGCCTGTAGCATCATCATTAAATGTTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

Contig11549___RASLCKTWELLYLCSSAMCPGTEIASCLLEYIHEAIKALENDSQLQTVVLTACKSLEHSVKNGTRL
Q7XPJ0________________RAWLIRAWELMYLCASSMPPSKDIGAYLSEYVHYIAHGATTDSDVRVLALNTLNALKRSVKAGPRV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain