SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene11540

Length: 343 nt

UniGene Fasta

>uagpf_v2_unigene11540
CGTCGTGACCTTGGCTGTCACTCAAAGCCTTATCTGGGTGTTGGACTTGGACCACTATCGTTCTTGACTAAACTACGGATACCACATCCAGGAAGAGTTGGAGGGAGGTTTTTCATAAAGATGGGAATGCCTCTAATGTTGGATTGGGTACTAGGAGGTAACAGTTCAAAGCTTGAAGGACGAGTTCCCAGTTGTAGGCTTAGTGAGAAAGCAAGTGACCAGCTTGGAAGATGGTTTGAAGATGATGATGCACTAGAACGTGCCCTAAATGTGGTGTGTTCAACCCACAGACCAGAGGATCTCCAGCATTTCACAGACCATTCATCTGAGCAAAGATGAAAAT

Ace file of the UniGene uagpf_v2_unigene11540

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11198	3/4

Source	Descriptions	Term	Type	Identity
AutoFact	Zeaxanthin epoxidase, chloroplastic (Fragment) n=3 Tax=Vitis vinifera RepID=D7SVX6_VITVI	-	-	75%
FL-Next	sp=Zeaxanthin epoxidase, chloroplastic; Oryza sativa subsp. japonica (Rice).	-	-	86%
Blast2go	zeaxanthin epoxidase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:1.14.13.9-	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	electron transport chain	GO:0022900	Biological Process	83%
Blast2go	xanthophyll biosynthetic process	GO:0016123	Biological Process	83%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	83%
Blast2go	cellular aromatic compound metabolic process	GO:0006725	Biological Process	83%
Blast2go	abscisic acid biosynthetic process	GO:0009688	Biological Process	83%
Blast2go	response to stress	GO:0006950	Biological Process	83%
Blast2go	zeaxanthin epoxidase [overall] activity	GO:0009540	Molecular Function	83%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	83%
Blast2go	chloroplast membrane	GO:0031969	Cellular Component	83%
Blast2go	zeaxanthin epoxidase activity	GO:0052662	Biological Process	83%
Blast2go	antheraxanthin epoxidase activity	GO:0052663	Biological Process	83%

Source	InterPros	Term	Type	Identity
Sma3	Forkhead-associated (FHA) domain	IPR000253	-	-
Sma3	Monooxygenase, FAD-binding	IPR002938	-	-
Sma3	Aromatic-ring hydroxylase-like	IPR003042	-	-
Sma3	Zeaxanthin epoxidase	IPR017079	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q0JCU7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 108 aas, your sequence is shorter than subject: 113 - 659

Fln protein: RRDLGCHSKPYLGVGLGPLSFLTKLRIPHPGRVGGRFFIKMGMPLMLDWVLGGNSSKLEGRVPSCRLSEKASDQLGRWFEDDDALERALNVVCSTHRPEDLQHFTDHSSEQR*

Protein Length: 114

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGCCTTATCTGGGTGTTGGACTTGGACCACTATCGTTCTTGACTAAACTACGGATACCACATCCAGGAAGAGTTGGAGGGAGGTTTTTCATAAAGATGGGAATGCCTCTAATGTTGGATTGGGTACTAGGAGGTAACAGTTCAAAGCTTGAAGGACGAGTTCCCAGTTGTAGGCTTAGTGAGAAAGCAAGTGACCAGCTTGGAAGATGGTTTGAAGATGATGATGCACTAGAACGTGCCCTAAATGTGGTGTGTTCAACCCACAGACCAGAGGATCTCCAGCATTTCACAGACCATTCATCTGAGCAAAGATGAAAAT

Fln Alignment:

Contig11540___KPYLGVGLGPLSFLTKLRIPHPGRVGGRFFIKMGMPLMLDWVLGGNSSKLEGRVPSCRLSEKASDQLGRWFEDDDALERAL
Q0JCU7________________RPYLGVGLGPLSFLTKLRIPHPGRVGGRFFIKYGMPLMLSWVLGGNSTKLEGRPLSCRLSDKANDQLRRWFEDDDALEQAM

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
37		25	75		0.996473
40		25	75		0.996473
41			25	75	0.996473
44	25		75		0.996473
45	75	25			0.996473
53	75		25		0.996473
54		75		25	0.996473
226		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain