SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene11438

Length: 715 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene11438

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene799	10/12
SustainPine v2.0	sp_v2.0_unigene65292	1/12

Source	Descriptions	Term	Type	Identity
AutoFact	DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RNW2_RICCO	-	-	67%
FL-Next	sp=Formin-like protein 6; Oryza sativa subsp. japonica (Rice).	-	-	67%
Blast2go	diaphanous 1	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	actin cytoskeleton organization	GO:0030036	Biological Process	0.0	82%
Blast2go	actin binding	GO:0003779	Molecular Function	0.0	82%

Source	InterPros	Term	Type	Identity
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Actin-binding FH2/DRF autoregulatory	IPR003104	-	-
Sma3	Outer membrane autotransporter barrel	IPR006315	-	-
Sma3	Tensin phosphatase, C2 domain	IPR014020	-	-
Sma3	Actin-binding FH2	IPR015425	-	-

Full-Lengther Next Prediction

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
123	80			20	0.995493
125			20	80	0.995493
128	80			20	0.995493
129	80		20		0.995493
130			80	20	0.995493
133	80	20			0.995493
134			80	20	0.995493
143		16	83		0.994512
144	83		16		0.994512
145	83			16	0.994512
150	83	16			0.994512
151		16	83		0.994512
152	83			16	0.994512
153	83			16	0.994512
154	83		16		0.994512
159	83			16	0.994512
160		16	83		0.994512
162	83	16			0.994512
163			83	16	0.994512
164		16	83		0.994512
165	85	14			0.993533
167			85	14	0.993533
173		14	85		0.993533
174	85	14			0.993533
175			85	14	0.993533
176	85			14	0.993533
180	85	14			0.993533
181	85			14	0.993533
185		14	85		0.993533
187	85			14	0.993533
188	85	14			0.993533
189	14		85		0.993533
213		10	90		0.90298
214	90		10		0.90298
215	90			10	0.90298
216		90	10		0.90298
221	90			10	0.90298
223			10	90	0.90298
225	90	10			0.90298
231	10		90		0.90298
235		10		90	0.90298
236	10	90			0.90298
410		12		87	0.992554
416	87			12	0.992554
421			87	12	0.992554
422			12	87	0.992554
423	87		12		0.992554
427	12		87		0.992554
428		12		87	0.992554
429			87	12	0.992554
430		12	87		0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain