SustainPineDB

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Assembly info
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene11428

Length: 478 nt

UniGene Fasta

>uagpf_v2_unigene11428
CGTCGTGACCTTGGCTGTCACTCCGGCAAAACCCATCGGTTTCTGCTCAATTGCAGCGGCGCCTTCTGTATGCCTTATATGTTTCATGTAAAGAGCAGCGCTCTGCTCAGTTAAATTCAGCAATGCCATCAGTTGCAATTTCAGACATAGCAAGAATTGAGGCCATTGTATCTAACCTTGGCAATTCAAGCAACCCAAAAGTTGCAGAGGCTGCTTTGGATGTGGTCTTGGAATTACAGTTACTGCATCACGGGACATAACATCGAAGGGATGTATAGTATATGAAAAAGATACATTAGAAGGTATGGGGTCCCGTACTAGTTTTGAATTCTTATCAACTTTAGGCGTTGGCTTTCTTTCTGTACCATTGAATATTCTTCCTAAATTCTAGGAATTGAAGTCAGAAAAGCCTTCTGTATGCAAATTAGCTTGTGCTTGTCTGGCACTCACCGAGTCTATACTGTGTTGAGATTTTGCA

Ace file of the UniGene uagpf_v2_unigene11428

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2577	3/4

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RSY9_RICCO	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	serine threonine-protein kinase ulk4-like	-	-	67%

Source	GOs	Term	Type	Identity
Blast2go	phragmoplast assembly	GO:0000914	Biological Process	67%
Blast2go	endosperm cellularization	GO:0010342	Biological Process	67%
Blast2go	microtubule binding	GO:0008017	Molecular Function	67%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	67%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC92

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 86 - 273

Fln protein: S*PWLSLRQNPSVSAQLQRRLLYALYVSCKEQRSAQLNSAMPSVAISDIARIEAIVSNLGNSSNPKVAEAALDVVLELQLLHHGT*

Protein Length: 87

Fln nts: CGTCGTGACCTTGGCTGTCACTCCGGCAAAACCCATCGGTTTCTGCTCAATTGCAGCGGCGCCTTCTGTATGCCTTATATGTTTCATGTAAAGAGCAGCGCTCTGCTCAGTTAAATTCAGCAATGCCATCAGTTGCAATTTCAGACATAGCAAGAATTGAGGCCATTGTATCTAACCTTGGCAATTCAAGCAACCCAAAAGTTGCAGAGGCTGCTTTGGATGTGGTCTTGGAATTACAGTTACTGCATCACGGGACATAA___CATCGAAGGGATGTATAGTATATGAAAAAGATACATTAGAAGGTATGGGGTCCCGTACTAGTTTTGAATTCTTATCAACTTTAGGCGTTGGCTTTCTTTCTGTACCATTGAATATTCTTCCTAAATTCTAGGAATTGAAGTCAGAAAAGCCTTCTGTATGCAAATTAGCTTGTGCTTGTCTGGCACTCACCGAGTCTATACTGTGTTGAGATTTTGCA

Fln Alignment:

Contig11428___LSLRQNPSVSAQLQRRLLYALYVSCKEQRSAQLNSAMPSVAISDIARIEAIVSNLGNSSNPKVAEAALDVVLELQLLHHGT
D5AC92________________LSLRQNPSVTSQLQRRLLYALYVSCKQLRSAQLNSVMRSVAISDITRIEAIVSKLGNSSNPKVAEAALDVVLELQLLHHGT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain