SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene11393

Length: 1247 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene11393

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6929	43/45

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal	-	-	5.0e-06	17%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	83%
Blast2go	uncharacterized protein loc100256571	-	-	0.0	54%

Source	InterPros	Term	Type	e value	Identity
Sma3	Btz domain	IPR018545	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9SQA8

Fln msg: Separated hits, possible frame ERROR between 122 and 155, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 122 - 683

Fln protein: S*PWLSLNAGLGVPAVGMALPGYVAQPQLGFGGSEMTWVxxxxxxxxxxxxTYCSPYIAVDGGYYAQPTTQPAAFGVAGRDSSGNKPQNTWKSTPRSELVNDEFGQRQNKPRRYSEMNFGQ*

Protein Length: 123

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGCTGGACTTGGGGTTCCTGCTGTTGGTATGGCACTACCTGGATATGTTGCTCAACCTCAACTTGGTTTTGGAGGATCTGAAATGACCTGGGTACCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCACTTACTGTTCTCCATATATAGCAGTTGATGGGGGTTATTACGCCCAACCAACTACACAGCCTGCTGCATTTGGTGTTGCTGGAAGGGATTCCAGTGGAAACAAGCCCCAAAACACGTGGAAGTCAACTCCAAGATCAGAACTTGTAAATGATGAATTTGGGCAGCGTCAAAATAAGCCACGCAGATATTCTGAGATGAACTTTGGTCAGTGAGGTTTGTGTCATCTGCTGAGTAACTGCTACTAAACAGCTACAAGGATCACTTGCAATAGCTGTCTGATTTTCACATTTGCTCTGATACATTTGAGGCGGTACTATGATTCAGCATAATTTCTCTATAAGCATTCAAAAGTAGTCTTCTCGATATGGACTATCTGCTATAATGGATACAAGTTGAGTTCTAATGATTATTGCAACAGGCTGATTGAATAGTTGTTTTGTATTTGGGAGATACTCGTCTATGTGGATTGATTGTTCAGTGGTACAAAGATCACAGATATATTCATATGGTCAGCTCTATTAGTTTTACGTTGTACAGTACACTGCAAATACAGACAAGGGAATTGGTACAAGTTACGCTTCAAAGCTTGTTTCTGGAAGAGTTTCACGTTTTGCAGTTTCAAGAGCACATGATAAAACTGTAGGTGAGAATAAACCTTCCACTTGAGTGGGATCAATGGGTTCACGCAGCTCATCGTCTAGACATCTCCATATATCCTGCCGGCATGCCTATAGTTACGTGTTTTGTAAGCCCTCCTATATGCTATAATCAGGTGGTCGGATTACTTCGCATAATTGTGGAAGATTTTTTTCTTCAAATATGATTATTGTGTACATTGGGTTGAGATAGTTTCGGTTGATTACTTGTTATTGCGGACGGTATAGGTGTTTCACAATTGTCAAGTTTCAAAATATCATTTAAATAAAGCTTTGGCCTGTTGAATTACAGTAGGGTTCAGTTAAAAGTTTCCAATATTGTGGATTCCATTGTTCTATCTTTCACAGTTCCAAGTGGCCTTTCTATGAAATTTAAGAACCCTCGAGTTATTCCACGAGGTTTCTAATTTTGGAAAATGATTGAAACTGAAAACCT

Fln Alignment:

Contig11393___GLGVPAVGMALPGYVAQPQLGFGGSEMTWVPxxxxxxxxxxxTYCSPYIAVDGGYYAQPTTQPAAFGVAGRDSSGNKPQNTWKSTPRSELVNDEFGQRQNKPRRYSEMNFGQ
B9SQA8________________GIGVPAVGMAFPGYVAQPQLGLGNSEMTWLPxxxxxxxxxxxTYCSPYIAVDGAYHARPSGQTSSSGSSSKENSTNKSSNEWKPSQKPEIVNDEFGQRQ-KPRRYSEMDFKQ

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
334		83	16		0.994512
335	83			16	0.994512
338	16	66		16	0.988813
342		16		83	0.994512
343	83	16			0.994512
349	83			16	0.994512
350		16	83		0.994512
353	16		83		0.994512
651		27	72		1.0
652	72		22		1.0
654	72	11	16		1.0
656	72		16	11	1.0
657	16		5	72	1.0
658	5	16		77	1.0
660	77	5		16	1.0
662	77		16		1.0
663		16		83	1.0
664			82	17	1.0
669			82	11	0.999919
673	11			88	0.999952
754	87			12	0.999964
757		12	87		0.999964

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain