SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene11355

Length: 764 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene11355 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1530	4/6
SustainPine v2.0	sp_v2.0_unigene76720	2/6

Source	Descriptions	Term	Type	Identity
AutoFact	Peptide chain release factor 1 [Arabidopsis thaliana] gb\|ABN04796.1\| At2g47020 [Arabidopsis thaliana] gb\|AEC10789.1\| Peptide chain release factor 1 [Arabidopsis thaliana]	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	51%
Blast2go	peptide chain release factor 1	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	translational termination	GO:0006415	Biological Process	82%
Blast2go	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	82%
Blast2go	translation release factor activity, codon specific	GO:0016149	Molecular Function	82%
Blast2go	mitochondrion	GO:0005739	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Amidase	IPR000120	-	-
Sma3	Peptide chain release factor class I/class II	IPR000352	-	-
Sma3	Peptide chain release factor 1	IPR004373	-	-
Sma3	Peptide chain release factor	IPR005139	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-

Full-Lengther Next Prediction

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
243	33	66			0.997452
254	66		33		0.997452
443		33		66	0.997452
478		66	33		0.997452
480	75	25			0.996473
482			25	75	0.996473
483		25		75	0.996473
484		25		75	0.996473
486	25		75		0.996473
489		75	25		0.996473
490	75			25	0.996473
493		25		75	0.996473
495	25	75			0.996473
496		25		75	0.996473
537	66			33	0.997452
538			33	66	0.997452
539	33			66	0.997452
540			33	66	0.997452
541		66		33	0.997452
544		33	66		0.997452
545	33		66		0.997452
546			33	66	0.997452
547		33		66	0.997452
550	33		66		0.997452
551	66		33		0.997452
552			66	33	0.997452
554		33		66	0.997452
555	33			66	0.997452
556		33	66		0.997452
557			33	66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain