SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene11320

Length: 2647 nt

UniGene Fasta

>uagpf_v2_unigene11320
CGTCGTGACCTTGGCTGTCACTCAATGGTGTTCGGTGAGGTCGTTGTGCGATCTGCCTACCCTTGATGACTTCAAGGGAATTCCATTAATGAAGCGAAAGCTCCTCGGAAAATCCGTCAAATTCGAGTTTCAGCTGCTATCAACCTTAGTTCTCCTGAGGTTTATGGCTAGATTTGAAGCCTTGCTTTGATCGAACTACGTTGTTGTCCTATACCCACATCAGATTTGGCACGATCCATTCTTTTGGATCTTTCCAAAAGGTTTAACTTTTTAAGTAGGTGTAGCATATTATTTGGCATAAATCGCCTTGACTTCAAGCCTGGGTTCTGGCAATTATAAGTTCGAAGAGAACTCCGACGACGCCCACATGGATTTGTAAGGTTTTCAAGCCTGGAAATTGCATGCAGTGGTCTGTTGTTTCAGAGGGCTTGCTTTGAAGCAAAAAAATTGCATATATTGGTTATTGTTTTGGGTCATATCAGTGGTTTTTAGAGCTGCGCCATTGCATTCATCAGTGGGTTTTAGTGGATGTTTTGACTTATTCCAGTGATTTTTAGAGCAGAGGAATTGCATTTGTTAGCGGGTCTTTGTGGGTGTTTAAGGATTACATTCTGCAATGCAGAGTCCAACAATGGCAGGGCTTATTCATGGGAAGGAGCCCATGTTATCTTCAGTCTTGGGCAACAGAATCTCTCTGAATCCAAGGATCCACTCTGCATCAGCCAAAAGGTGTGTAAAGCGTTTCACAACCCATGCAAAAATCAGGGAGATTTTCATGCCTGCATTGAGCTCTACCATGACTGAAGGGAAGATTGTATCTTGGACGAAATCTGAAGGAGATAAGGTTCAGAAAGGTGAGAGTGTGGTTGTAGTTGAATCAGATAAAGCAGACATGGATGTAGAAACATTCTATGATGGGTTTCTTGCAGCCATCATGGTTGAAGAAGGTAGCGTTGCCCCTGTTGGGTCTGCCATTGCCCTGCTAGCAGAAAACGAGGAAGAGATCTCAGAGGCCAAATTGAAGGCATCCAACAGTGCTACAACCACTGCATCCGCACCACCTTCAATGCCGCCTTCCCCATCCCTAACAACTTCGGCAGCAGCATCCCCGTCACCTTCTTCTGAAGCTGTATTACCATCGAAACCAGCCTCTGCCGCAGCCCCTGTGGCCTCATCAATCCATCCTGCATCAGAAGGGGGCAAGAGAGTTGTTGCAACACCATATGCAAAGCAGCTTGCCAATCAGTTTAATGTTGATTTGGCTTCCATTGTTGGGACTGGTCCTATGGGGCGTATTGTGGCTAAGGATGTAGAAGCAGCTAAGGGCAAACCAGAATTGGCTCCTTCAGCTGCTCAACCTGTGTCTTCCCCCCCGACTAAATCATTGGTGGCTAGCCCCACTGAAATTCCAACTATTGTTCCTGGCACCAGTGTGCCATTCACTACAATGCAAGGTGCAGTCAGCAGGAATATGGTAGAGAGCCTTCAAGTTCCCACTTTCCGTGTTGGCTACAGCATCATCACAGACAAGCTTGATGCCCTCTACAAAAAGATCAAGTCTAAAGGAGTGACAATGACTGCATTGCTTGCAAAAGCCACTGCCCTTGCTTTAGCCAAGCACCCAGCAGTCAATGCAAGCTGCAAAGATGGCAAGAGTTTCACCTACAATAGCAACATAAACATTGCAGTCGCTGTGGCTATGGACGGAGGTCTAATTACACCCGTGCTTCAGGATGCAGACAAGGTTGATATATATACTCTCTCTAGGAAATGGAAAGAATTAGTAGATAAGGCTCGTGCAAAGCAGCTTCAGCCTCAGGAATATAATACAGGAACTTTTACTCTATCTAATTTAGGAATGTTTGGTGTGGATCGTTTTGATGCAATCCTGCCTCCTGGTTCTGGAGCAATTATGGCTGTGGGGGCATCCCAACCAACAGTTGTTGCAACTGCTGATGGATTAATCGGTTTGAAAAACCAAATGCAGGTTAATGTGACAGCAGATCACAGGATTATATATGGTGCTGACCTGGCTTCCTTTTTGCAAACACTTTCAAAAATTATTGAAGAACCCAATGAGCTCACTCTGTAGACCCTTCTAAAAGGACTGTGTCCTGTCTTGACCCACCATTATAGGTTTCACATTTCTACATTTTTTGAGTTTACAGTTTTTCTTGTGGCGGAGGGAATACTCTTTGATGCTGTTTTCATTTGCACATGGTTATTTCAGGCCCGCCTTGTTTGAATAAAAGGGTAGACAATTCGAATATACGTGGTGGCATTCATTTGATATCTCATTCAAAAATCACTGTGAAATGTGATTGAAATAACGTATTTCGATATTGATGATGCCAAGAGTTTCAATTCTTTTTTAAAATAAAGTAGTTTTGACAAATCATCTTATTAGTGTGAAAAGGGTCAGCGAGGATGATGGCTTTTCGATCATCATTTTTGGCTTTTATCTTTTAATATGCCAACAATTGCATTCAAGGAAACTCGTGTCTCTATAGCAGGCATTTGGGATGATAACGGGCACATTTCATTGCTACCTCAAAATGTATTAAGATTATTTTCCAAGGCTGGTGTCCTTGAAAATTAATACATCATTGGTTCATGTCGGGAAGAAAGTGAAATAAATGACCTCATC

Ace file of the UniGene uagpf_v2_unigene11320

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21396	90/91

Source	Descriptions	Term	Type	Identity
AutoFact	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9SLH2_RICCO	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	72%
Blast2go	dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase mitochondrial-like	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	84%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	84%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	84%
Blast2go	plasma membrane	GO:0005886	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Biotin/lipoyl attachment	IPR000089	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	2-oxoacid dehydrogenase acyltransferase, catalytic domain	IPR001078	-	-
Sma3	Ribosomal protein S10	IPR001848	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	E3 binding	IPR004167	-	-
Sma3	Ribosomal protein S10, eukaryotic/archaeal	IPR005729	-	-
Sma3	Ribosomal protein S10, conserved site	IPR018268	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6GY10

Fln msg:

Fln protein: MQSPTMAGLIHGKEPMLSSVLGNRISLNPRIHSASAKRCVKRFTTHAKIREIFMPALSSTMTEGKIVSWTKSEGDKVQKGESVVVVESDKADMDVETFYDGFLAAIMVEEGSVAPVGSAIALLAENEEEISEAKLKASNSATTTASAPPSMPPSPSLTTSAAASPSPSSEAVLPSKPASAAAPVASSIHPASEGGKRVVATPYAKQLANQFNVDLASIVGTGPMGRIVAKDVEAAKGKPELAPSAAQPVSSPPTKSLVASPTEIPTIVPGTSVPFTTMQGAVSRNMVESLQVPTFRVGYSIITDKLDALYKKIKSKGVTMTALLAKATALALAKHPAVNASCKDGKSFTYNSNINIAVAVAMDGGLITPVLQDADKVDIYTLSRKWKELVDKARAKQLQPQEYNTGTFTLSNLGMFGVDRFDAILPPGSGAIMAVGASQPTVVATADGLIGLKNQMQVNVTADHRIIYGADLASFLQTLSKIIEEPNELTL*

Protein Length: 493

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGGTGTTCGGTGAGGTCGTTGTGCGATCTGCCTACCCTTGATGACTTCAAGGGAATTCCATTAATGAAGCGAAAGCTCCTCGGAAAATCCGTCAAATTCGAGTTTCAGCTGCTATCAACCTTAGTTCTCCTGAGGTTTATGGCTAGATTTGAAGCCTTGCTTTGATCGAACTACGTTGTTGTCCTATACCCACATCAGATTTGGCACGATCCATTCTTTTGGATCTTTCCAAAAGGTTTAACTTTTTAAGTAGGTGTAGCATATTATTTGGCATAAATCGCCTTGACTTCAAGCCTGGGTTCTGGCAATTATAAGTTCGAAGAGAACTCCGACGACGCCCACATGGATTTGTAAGGTTTTCAAGCCTGGAAATTGCATGCAGTGGTCTGTTGTTTCAGAGGGCTTGCTTTGAAGCAAAAAAATTGCATATATTGGTTATTGTTTTGGGTCATATCAGTGGTTTTTAGAGCTGCGCCATTGCATTCATCAGTGGGTTTTAGTGGATGTTTTGACTTATTCCAGTGATTTTTAGAGCAGAGGAATTGCATTTGTTAGCGGGTCTTTGTGGGTGTTTAAGGATTACATTCTGCA_-_ATGCAGAGTCCAACAATGGCAGGGCTTATTCATGGGAAGGAGCCCATGTTATCTTCAGTCTTGGGCAACAGAATCTCTCTGAATCCAAGGATCCACTCTGCATCAGCCAAAAGGTGTGTAAAGCGTTTCACAACCCATGCAAAAATCAGGGAGATTTTCATGCCTGCATTGAGCTCTACCATGACTGAAGGGAAGATTGTATCTTGGACGAAATCTGAAGGAGATAAGGTTCAGAAAGGTGAGAGTGTGGTTGTAGTTGAATCAGATAAAGCAGACATGGATGTAGAAACATTCTATGATGGGTTTCTTGCAGCCATCATGGTTGAAGAAGGTAGCGTTGCCCCTGTTGGGTCTGCCATTGCCCTGCTAGCAGAAAACGAGGAAGAGATCTCAGAGGCCAAATTGAAGGCATCCAACAGTGCTACAACCACTGCATCCGCACCACCTTCAATGCCGCCTTCCCCATCCCTAACAACTTCGGCAGCAGCATCCCCGTCACCTTCTTCTGAAGCTGTATTACCATCGAAACCAGCCTCTGCCGCAGCCCCTGTGGCCTCATCAATCCATCCTGCATCAGAAGGGGGCAAGAGAGTTGTTGCAACACCATATGCAAAGCAGCTTGCCAATCAGTTTAATGTTGATTTGGCTTCCATTGTTGGGACTGGTCCTATGGGGCGTATTGTGGCTAAGGATGTAGAAGCAGCTAAGGGCAAACCAGAATTGGCTCCTTCAGCTGCTCAACCTGTGTCTTCCCCCCCGACTAAATCATTGGTGGCTAGCCCCACTGAAATTCCAACTATTGTTCCTGGCACCAGTGTGCCATTCACTACAATGCAAGGTGCAGTCAGCAGGAATATGGTAGAGAGCCTTCAAGTTCCCACTTTCCGTGTTGGCTACAGCATCATCACAGACAAGCTTGATGCCCTCTACAAAAAGATCAAGTCTAAAGGAGTGACAATGACTGCATTGCTTGCAAAAGCCACTGCCCTTGCTTTAGCCAAGCACCCAGCAGTCAATGCAAGCTGCAAAGATGGCAAGAGTTTCACCTACAATAGCAACATAAACATTGCAGTCGCTGTGGCTATGGACGGAGGTCTAATTACACCCGTGCTTCAGGATGCAGACAAGGTTGATATATATACTCTCTCTAGGAAATGGAAAGAATTAGTAGATAAGGCTCGTGCAAAGCAGCTTCAGCCTCAGGAATATAATACAGGAACTTTTACTCTATCTAATTTAGGAATGTTTGGTGTGGATCGTTTTGATGCAATCCTGCCTCCTGGTTCTGGAGCAATTATGGCTGTGGGGGCATCCCAACCAACAGTTGTTGCAACTGCTGATGGATTAATCGGTTTGAAAAACCAAATGCAGGTTAATGTGACAGCAGATCACAGGATTATATATGGTGCTGACCTGGCTTCCTTTTTGCAAACACTTTCAAAAATTATTGAAGAACCCAATGAGCTCACTCTGTAG___ACCCTTCTAAAAGGACTGTGTCCTGTCTTGACCCACCATTATAGGTTTCACATTTCTACATTTTTTGAGTTTACAGTTTTTCTTGTGGCGGAGGGAATACTCTTTGATGCTGTTTTCATTTGCACATGGTTATTTCAGGCCCGCCTTGTTTGAATAAAAGGGTAGACAATTCGAATATACGTGGTGGCATTCATTTGATATCTCATTCAAAAATCACTGTGAAATGTGATTGAAATAACGTATTTCGATATTGATGATGCCAAGAGTTTCAATTCTTTTTTAAAATAAAGTAGTTTTGACAAATCATCTTATTAGTGTGAAAAGGGTCAGCGAGGATGATGGCTTTTCGATCATCATTTTTGGCTTTTATCTTTTAATATGCCAACAATTGCATTCAAGGAAACTCGTGTCTCTATAGCAGGCATTTGGGATGATAACGGGCACATTTCATTGCTACCTCAAAATGTATTAAGATTATTTTCCAAGGCTGGTGTCCTTGAAAATTAATACATCATTGGTTCATGTCGGGAAGAAAGTGAAATAAATGACCTCATC

Fln Alignment:

Contig11320___PMLSSVLGNRISLNPRIHSASAKRCVKRFTTHAKIREIFMPALSSTMTEGKIVSWTKSEGDKVQKGESVVVVESDKADMDVETFYDGFLAAIMVEEGSVAPVG
F6GY10________________PSSSSALRRNPTSSPAIHISGNKRT----TIQAKIREIFMPALSSTMTEGKIVSWVKSEGDKLSKGESVVVVESDKADMDVETFYDGYLAAIMVEEGGVAAVG

SNPs (tot: 133)

Position	A %	C %	G %	T %	Probability
163		20		80	0.995493
164	80		20		0.995493
166		20	80		0.995493
168		80		20	0.995493
169			20	80	0.995493
171		20	80		0.995493
172	80	20			0.995493
175			20	80	0.995493
177	80	20			0.995493
178	80			20	0.995493
182	20	80			0.995493
183		20		80	0.995493
185		20	80		0.995493
186	20	80			0.995493
400	87	12			0.992554
404		87	12		0.992554
405	87	12			0.992554
410		12	87		0.992554
412		12	87		0.992554
413	12		87		0.992554
457		20		80	0.999996
460	80	20			0.999996
464	10		90		0.90298
465		10		90	0.90298
466		10		90	0.90298
467	90			10	0.90298
469			10	90	0.90298
471		10		90	0.90298
473			10	90	0.90298
475		10	90		0.90298
476	10		90		0.90298
477		10	90		0.90298
502	10	90			0.90298
534		9		90	0.999872
537		9		90	0.999872
538			9	90	0.999872
545	90	9			0.999872
547			9	90	0.999872
548		90		9	0.999872
551		9	90		0.999872
553		10	89		0.999919
655		17	82		1.0
657	82			17	1.0
658	82	17			1.0
666		82		17	1.0
667	82			17	1.0
668			17	82	1.0
670		17		82	1.0
672	82		17		1.0
675		17		82	1.0
1234	83		16		0.994512
1235	83			16	0.994512
1236	83	16			0.994512
1238		83	16		0.994512
1240		16	83		0.994512
1245		83	16		0.994512
1247	83			16	0.994512
1248	83		16		0.994512
1252		16	83		0.994512
1254		16		83	0.994512
1255	16			83	0.994512
1786	66	33			0.997452
1787			33	66	0.997452
1789	66	33			0.997452
1796		33		66	0.997452
1797	66			33	0.997452
1798	66			33	0.997452
1810	66	33			0.997452
1811	66			33	0.997452
1812		33	66		0.997452
1813	33	66			0.997452
1831		16		83	0.994512
1832	83		16		0.994512
1834	83	16			0.994512
1835	83		16		0.994512
1836		22		77	0.999999
1837	77		22		0.999999
1838		77		22	0.999999
1839	66	33			1.0
1840			88	11	0.923564
1841			66	33	1.0
1842	66		33		1.0
1843	88		11		0.923564
1845		22		77	0.999999
1846			11	88	0.923564
1848		11	22	66	0.999999
1849	77		22		0.999999
1851		10		90	0.90298
1852		70	30		1.0
1853	10			90	0.90298
1854	60	30			1.0
1855	30			60	1.0
1858		33	11		1.0
1861	90	10			0.90298
1862		10		90	0.90298
1869	90	10			0.90298
1873		10		90	0.90298
1874	10			90	0.90298
1875		10	90		0.90298
1876			90	10	0.90298
1877		11		88	0.923564
1878	11		88		0.923564
1907	14		7	78	0.999974
2020		16	83		1.0
2022	83			16	1.0
2023		16		83	1.0
2024	5		11	83	0.999887
2025	83			16	1.0
2026			11	88	0.999937
2028		11		88	0.999937
2029	88	11			0.999937
2031			83	16	1.0
2038	83			16	1.0
2040	16	83			1.0
2041		17		82	1.0
2042			81	18	1.0
2043		12	87		0.999964
2044	13	86			0.999973
2172	76		7		0.999983
2174		15		84	0.999986
2176		7	15	76	0.999983
2177	84			15	0.999986
2195			86	13	0.999973
2196	86	13			0.999973
2198			86	13	0.999973
2201	86	13			0.999973
2203	86			13	0.999973
2204		86	13		0.999973
2205			13	86	0.999973
2208			13	86	0.999973
2210		13	86		0.999973
2213		13	86		0.999973
2214	13	86			0.999973

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain