SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene11292

Length: 391 nt

UniGene Fasta

>uagpf_v2_unigene11292
CGTCGTGACCTTGGCTGTCACTCAGGTGGGCAAAAGCAGCAGATTGCGATAGCGAGGGCGATAATAAAGAATCCAAGCATATTACTGCTGGATGAGGCAACAAGCGCGTTGGACAGCCAGTCAGAGAAGATTGTTCAAGAGGCACTGGACAGAATAATGGTGGGAAGAACGAGCATTGTGATAGCTCATCGACTCACCACCATTCAGAATGCAGATTCGATTGCCGTGATTCAAGAAGGGAAAGTGATTGAGCAGGGAAGTCACTCGTATCGGATGAGCAAAGGAGAAGGCAATCCATATTACTCTCTCGTCAACATGTAGCGACACCACCACTAGATTCTCATCTTACCAACACAGTAAAGTTCTCCGTGATCCAGGTCACTGAGACTGC

Ace file of the UniGene uagpf_v2_unigene11292

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene36472	3/5
SustainPine v2.0	sp_v2.0_unigene36581	2/5

Source	Descriptions	Term	Type	Identity
AutoFact	Multidrug/pheromone exporter protein n=1 Tax=Hevea brasiliensis RepID=F2YGT1_HEVBR	-	-	66%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	63%
Blast2go	abc transporter b family member	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	86%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3		IPR013596	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: your sequence is shorter than subject: 107 - 1316

Fln protein: RRDLGCHSGGQKQQIAIARAIIKNPSILLLDEATSALDSQSEKIVQEALDRIMVGRTSIVIAHRLTTIQNADSIAVIQEGKVIEQGSHSYRMSKGEGNPYYSLVNM*

Protein Length: 108

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTGGGCAAAAGCAGCAGATTGCGATAGCGAGGGCGATAATAAAGAATCCAAGCATATTACTGCTGGATGAGGCAACAAGCGCGTTGGACAGCCAGTCAGAGAAGATTGTTCAAGAGGCACTGGACAGAATAATGGTGGGAAGAACGAGCATTGTGATAGCTCATCGACTCACCACCATTCAGAATGCAGATTCGATTGCCGTGATTCAAGAAGGGAAAGTGATTGAGCAGGGAAGTCACTCGTATCGGATGAGCAAAGGAGAAGGCAATCCATATTACTCTCTCGTCAACATGTAG___CGACACCACCACTAGATTCTCATCTTACCAACACAGTAAAGTTCTCCGTGATCCAGGTCACTGAGACTGC

Fln Alignment:

Contig11292___SGGXXXXXXXXXXXXXNPSILLLDEATSALDSQSEKIVQEALDRIMVGRTSIVIAHRLTTIQNADSIAVIQEGKVIEQGSHSYRMSKGEGNPYYSLVNM
E6Y0T0________________SGGQKQRIAIARAILKDPRILLLDEATSALDTESERVVQEALDRIMVNRTTVIVAHRLTTVRNADMIAVVQRGSIVEKGSHSQLITNPSG-AYSQLIHL

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
175	80	20			0.995493
183	40		40		1.0
185	80	20			0.995493
186	20		80		0.995493
197		60	40		1.0
198	40		60		1.0
209			60	40	1.0
227		60		40	1.0
255		60	40		1.0
266		40		60	1.0
269			40	60	1.0
274			40	60	1.0
287	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain