SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene11181

Length: 1307 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene11181

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26042	15/17

Source	Descriptions	Term	Type	Identity
AutoFact	hypoxia up-regulated 1 [Arabidopsis thaliana] gb\|AEE83781.1\| hypoxia up-regulated 1 [Arabidopsis thaliana]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	27%
Blast2go	hypoxia up-regulated protein 1-like	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	76%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	76%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3		IPR004348	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQU3

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 75 aas, putative chimeric sequence, your sequence is shorter than subject: 257 - 388

Fln protein: VVTLAVTQILSNASSESSTSPTSSSEKEEGNLKGEGFENNATTPENVTQDSKPVTEKKLRKRTFRVPLKVMDATDGPGRALSKESFVEAGVRLSDLNRKDAERKRTAELKNSLEEYIYSTKEKLDSSEDIEKVSTQEQRSSFKDKLDEAQEWLYMDGEDASADEFEKHLDSLKTTGGEIFFRLKELSARPVAGKYVREYLDGLHKTLGEWEKTKPWIASSYKNEILDEVDKIKKWLDENEAKQAKNSRIHGSHLHI*

Protein Length: 258

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTTTGTCCAATGCATCATCTGAATCAAGTACAAGTCCAACGAGCTCTAGTGAAAAGGAAGAGGGCAACTTAAAGGGCGAGGGATTTGAGAATAATGCTACAACTCCTGAAAATGTAACTCAAGATTCAAAGCCCGTAACTGAAAAGAAATTGAGAAAAAGAACTTTTAGAGTTCCTCTCAAGGTAATGGATGCTACTGATGGTCCTGGAAGAGCCCTCTCTAAAGAATCATTTGTAGAAGCTGGAGTTAGGCTTTCAGATCTGAATCGGAAAGATGCAGAGAGGAAAAGGACAGCTGAACTTAAAAATAGCCTCGAGGAATACATCTATTCTACTAAAGAAAAGTTGGACTCATCTGAGGACATTGAGAAAGTCTCAACTCAAGAACAGCGTAGCTCCTTCAAAGACAAACTTGACGAGGCTCAAGAATGGTTGTACATGGATGGAGAGGATGCTTCTGCAGATGAATTTGAAAAACACCTTGATTCACTGAAAACAACTGGAGGGGAAATATTTTTCAGATTGAAGGAACTGAGTGCTCGACCTGTAGCGGGTAAATATGTTCGGGAATATCTTGATGGATTGCATAAGACATTAGGTGAATGGGAGAAAACCAAACCTTGGATTGCCTCATCGTATAAAAATGAGATTTTGGATGAAGTGGATAAGATAAAGAAATGGCTTGATGAGAATGAAGCTAAACAGGCCAAAAACTCCAGGATACATGGTTCCCATCTTCACATCTGA___TGAAGTATATGGAAAAGTTGGAAAGCTTCAAGAGAAGGTGCTTAAGATCAGCAATATCCCTAGGCCAAAGCCAAAGGTTGAAAAACCTCCAAAAAATGACTCTGTCAAGGCTGACAACCAAGATGATGGCAGATCCACTTCCAGCAACAGCACAGATAACGAAGCTGCTGGAGAAACGACACGTGAACCAAGTGAATCTGAAGGACACTCACAGGGAGAAAAGATACATGAACCAAGTGAATCTGAAGGACACTCAGAGGGATCAAATGGCGAACAAGATGCCAACGAGGAACCTTTTGATGAACTATGAAAGGAGCAAGAAATTTCAAAAATATGCAAGACCTACGTACAATTAGGGTGCAGAAATTGTTAGTGAATGTACAGAAAGTGTTTGGCAGGGCTCATGTCACCGTCGATTTTGATAAACATCATTTTTTCCTGTCTTACATTCCGGCAGTAGGCAGTGGGATGCATCCTATGTAACCCACAAATGGTCTCTTTTGTAAACGTACAATATTCGAAAGCAAGACCAGTC

Fln Alignment:

Contig11181___KPVTEKKLRKRTFRVPLKVMDATDGPGRALSKESFVEAGVRLSDLNRKDAERKRTAELKNSLEEYIYSTKEKLDSSEDIEKVSTQEQRSSFKDKLDEAQEWLYMDGEDASADEFEKHLDSLKTTGGEIFFRLKELSARPVAGKYVRE--YLDGLHKTLGEWEKTKPWIASSYKNEILDEVDKIKKWLDENEAKQ
C0PQU3________________KTVRKKKVKKTEVPINEKIFGAL--PRADLQKATDEEFEMAL-----QDRVMEETKEKKNAVEAYVYDMRNKL--YEKYQAYVTESQREELTLKLQTVEDWLYDEGEDETKGVYIAKLEELKKFGDPIEERYKEDMER---GRSIDELMYCINSYRTAALSKDKYDHIDIADKQKVVSECSEAETWLSDKKQQQ

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
125			33	66	0.997452
126	66			33	0.997452
128	66		33		0.997452
129	66			33	0.997452
130		66	33		0.997452
131	33			66	0.997452
136	66			33	0.997452
137	66		33		0.997452
138	66		33		0.997452
139	66	33			0.997452
143	66	33			0.997452
529		20	80		0.995493
531	80			20	0.995493
532		20	80		0.995493
534			80	20	0.995493
538	80	20			0.995493
539	80			20	0.995493
541	80		20		0.995493
542			20	80	0.995493
543		20		80	0.995493
545			20	80	0.995493
549		20	80		0.995493
550	80			20	0.995493
551		20		80	0.995493
552	20			80	0.995493
937		33	66		0.997452
958	75			25	0.996473
964	75	25			0.996473
966		75		25	0.996473
967	75			25	0.996473
968	75		25		0.996473
973	75			25	0.996473
974	75	25			0.996473
975	25			75	0.996473
978		25	75		0.996473
988		87	12		0.992554
991	87	12			0.992554
992			87	12	0.992554
993			87	12	0.992554
997	87	12			0.992554
998	87			12	0.992554
999	87		12		0.992554
1000	87			12	0.992554
1001		12	87		0.992554
1003		12		87	0.992554
1004	87			12	0.992554
1044	88	11			0.923564
1045	88		11		0.923564
1047		11	88		0.923564
1049		88		11	0.923564
1052	88	11			0.923564
1054	77			11	0.968132
1055	88		11		0.923564
1057	88	11			0.923564
1060		88		11	0.923564
1063	88			11	0.923564
1258	25	25			0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain