SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene11119

Length: 1825 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene11119

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8369	46/48

Source	Descriptions	Term	Type	Identity
AutoFact	Poly(A) polymerase alpha, putative n=1 Tax=Ricinus communis RepID=B9SFV5_RICCO	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	poly polymerase	-	-	65%

Source	ECs	Term	Type	e value	Identity
Blast2go	Polynucleotide adenylyltransferase.	EC:2.7.7.19	-	0.0	65%

Source	GOs	Term	Type	Identity
Blast2go	RNA polyadenylation	GO:0043631	Biological Process	65%
Blast2go	RNA binding	GO:0003723	Molecular Function	65%
Blast2go	polynucleotide adenylyltransferase activity	GO:0004652	Molecular Function	65%
Blast2go	nucleus	GO:0005634	Cellular Component	65%

Source	InterPros	Term	Type	Identity
Sma3	Nucleotidyl transferase domain	IPR002934	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Protein of unknown function DUF599	IPR006747	-	-
Sma3	Poly(A) polymerase, RNA-binding domain	IPR007010	-	-
Sma3	Poly(A) polymerase, central domain	IPR007012	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Poly(A) polymerase	IPR014492	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A854

Fln msg: your sequence is shorter than subject: 509 - 554

Fln protein: VVTLAVTQIDIARTHALEKFQIDAELILTEKEEAKRRSVLAQLEQIVKRWARRVTRQRGLPKDLKESSNAKIFTFGSYQLGVHGPEADIDALCVGPCYATLEDDFFIVLHNMLKNTQEVSEVQCVKSANVPLMRFKFSGISIDLLYARLSLRTIPEDMDILDEKLLENIDDTTVKSLNGCRVTARILQLVPKIENFRSTLRCIKFWAKRRGIYSHTFGFLGGIHWAVLVARVCQMFPNATVSMLVSRFFWIYAHWQWPTPVTLVETQPDYSDGSDRHHHMPIIIPVYPYSCCSYNVTRSTLQKLKSEFSRGWDAIMKMELNWSTLPNSGDWNVLFERFPFCSSYDFFIQIHVTASDEDDFRSWRGWVESRFRHLLLKFEKLPAYCDPNPYPYFDKNVKEPHCYFLWGLRLKKNICIDMTDLEEEFRFYLSNGYEGRPGCDVYLTLLNRFQLPSFVYFKSSELRQHSKPYWTNESYNYYRRIPRYSQHYPVFLVGYVAVDNEAINHVGN*

Protein Length: 510

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATTGATATTGCTAGAACACATGCTCTTGAAAAGTTCCAAATTGACGCAGAATTGATATTGACTGAAAAAGAAGAAGCAAAGAGGCGAAGCGTACTGGCTCAACTTGAACAGATTGTCAAACGCTGGGCGAGGAGAGTAACTCGGCAAAGAGGTCTCCCAAAAGATCTGAAAGAAAGCAGTAATGCAAAAATATTCACCTTTGGGTCTTATCAGTTAGGGGTCCATGGACCAGAAGCAGATATTGATGCTTTGTGTGTTGGACCATGTTATGCAACATTGGAGGACGACTTTTTTATTGTTTTGCACAACATGCTTAAGAACACACAAGAAGTTTCAGAGGTTCAATGTGTGAAGAGTGCAAATGTTCCCTTGATGCGGTTTAAATTCAGTGGGATTTCAATTGATCTCTTATATGCAAGGCTTTCTCTGAGAACAATTCCAGAAGATATGGATATTCTCGATGAAAAATTGCTTGAGAATATTGATGATACAACTGTCAAAAGTTTGAATGGATGCAGAGTTACCGCACGGATCCTTCAGCTAGTACCCAAGATTGAGAACTTCCGTTCCACCCTGAGATGCATCAAGTTTTGGGCAAAGAGGAGAGGAATATATTCACATACTTTCGGGTTTCTTGGAGGAATACACTGGGCTGTGCTTGTTGCACGTGTTTGCCAAATGTTTCCAAATGCCACCGTCAGTATGCTGGTTTCAAGATTTTTTTGGATATATGCACATTGGCAGTGGCCAACTCCAGTGACATTGGTGGAGACCCAGCCTGATTATTCTGATGGATCAGATAGACATCACCATATGCCAATTATCATACCAGTGTACCCCTATAGTTGCTGCAGTTACAATGTTACAAGAAGCACCCTACAAAAACTCAAGTCAGAATTTTCACGTGGCTGGGATGCAATAATGAAAATGGAGTTAAATTGGAGCACCTTGCCAAATAGTGGTGACTGGAATGTACTCTTTGAACGGTTTCCTTTCTGCTCTAGTTATGATTTTTTCATTCAAATCCATGTTACAGCTTCAGATGAAGATGATTTTCGGAGTTGGAGAGGGTGGGTTGAATCACGTTTCCGTCATCTTCTCTTGAAGTTTGAAAAGCTTCCAGCATACTGTGATCCAAATCCATACCCATATTTTGACAAGAATGTAAAGGAGCCACATTGTTATTTTTTATGGGGACTAAGACTGAAGAAAAACATTTGTATTGATATGACTGATTTGGAGGAGGAGTTCAGGTTTTACCTCAGCAATGGATATGAAGGCCGACCAGGATGTGATGTTTATCTGACCTTGCTCAATCGATTTCAATTACCATCTTTTGTGTATTTCAAATCATCGGAACTCAGACAACACTCTAAACCATACTGGACAAATGAAAGCTATAACTACTATCGTAGAATTCCTAGATACTCTCAACATTACCCAGTTTTTCTTGTTGGCTACGTCGCAGTTGATAATGAAGCCATAAATCATGTTGGGAATTAG___AAGGGTTCTACTTCAGCTAGACTAGTAATTTCACGAGATGTGAAATTGAAGAAATTTTGGCCTGTATCTGGGAGTGCAAATTACACGCACAGAACTTCTATTTTGAAATCATTGTTGCAGTCTCAATTTGAAAATTCAAAACGAGCACAATATGCTGTTAAAGCTCGCTTACTTGTTTAAATGTAAAAACAAAATTGTTTTTGCAAATGATTAGATTGGCAAGCTCCATGCAAAACGATGATGATACGCTGAGTTCCTACATGCATCATGATAATGATATAACTATTTCTAGAATAG

Fln Alignment:

Contig11119___TQIDIARTHALEKFQIDAELILTEKEEAKRRSVLAQLEQIVKRWARRVTRQRGLPKDLKESSNAKIFTFGSYQLGVHGPEADIDALCVGPCYATLEDDFFIVLHNMLKNTQEVSEVQCVKSANVPLMRFKFSGISIDLLYARLSLRTIPEDMDILDEKLLENIDDTTVKSLNGCRVTARILQLVPKIENFRSTLRCIKFWAKRRGIYSHTFGFLGGIHWAVLVARVCQMFPNATVSMLVSRFFWIYAHWQWPTPVTLVETQPDYSDGSDRHHHMPIIIPVYPYSCCSYNVTRSTLQKLKSEFSRGWDAIMKMELNWSTLPNSGDWNVLFERFPFCSSYDFFIQIHVTASDEDDFRSWRGWVESRFRHLLLKFEKLPAYCDPNPYPYFDKNVKEPHCYFLWGLRLKKNICIDMTDLEEEFRFYLSNGYEGRPGCDVYLTLLNRFQLPSFVYFKSSELRQHSKPYWTNESYNYYRRIPRYSQHYPVFLVGYVAVDNEAINHVGN
D5A854________________TDIDIARTHALEKFQIDAELILTEKEEAKRRSVLAQLEQIVKRWARRVTWQRGLPKDLKESSNAKIFTFGSYQLGVHGPEADIDALCVGPCYATLEDDFFIVLYNMLKKTAEVSEVQCVKSANVPLMRFKFSGISIDLLYARLSLRTIPEDMDILDEKLLENLDDTTVKSLNGCRVTARILQLVPKIENFRSTLRCIKFWAKRRGIYSHIFGFLGGIHWAVLVARVCQMFPNATVSMLVSRFFWIYAHWQWPTPVTLVETQPDHADGSDRHHHMPIIIPVHPYSCCSYNVTRSTLQKLKSEFSRGWDAIMKMETKWGTLPNSGDWNILFERFPFCSSYEYFIQIYVTASDEDDFRSWRGWVESRFRHLLLKFEKLPAYCDPNPYPYFDKNVKEPHCYFLWGLKLRKNISVDMADLEDEFRLYLSNGYEGRPGCDVHLTLLNRFQLPSFANSKSSELRQHSKPYWTNESYNYYRRIPRYSQYYPLYVVGYIAVDKEAINHVGN

SNPs (tot: 126)

Position	A %	C %	G %	T %	Probability
362	75	25			0.996473
364	75			25	0.996473
365		25	75		0.996473
369	25			75	0.996473
371	75	25			0.996473
372	75			25	0.996473
375			25	75	0.996473
376		25	75		0.996473
380	75			25	0.996473
381		25	75		0.996473
382	80	20			0.995493
383		20	80		0.995493
385		20	60		0.99255
386		80	20		0.995493
387	80			20	0.995493
388	80		20		0.995493
390		20		80	0.995493
391		20	80		0.995493
394		80	20		0.995493
395		80	20		0.995493
399		20	80		0.995493
401		20		80	0.995493
402			80	20	0.995493
405	20		80		0.995493
501		16		83	0.994512
503	83			16	0.994512
506	83	16			0.994512
507		16		83	0.994512
508	83			16	0.994512
510			16	83	0.994512
512	83	16			0.994512
524		16		83	0.994512
525	16	66		16	0.988813
595			14	85	0.993533
596		85		14	0.993533
597		85	14		0.993533
601		85		14	0.993533
606	85	14			0.993533
756		33		66	0.997452
757	66		33		0.997452
760	66		33		0.997452
766	66	33			0.997452
772	66			33	0.997452
775		33	66		0.997452
776	33		66		0.997452
796		20	80		0.995493
799		20	80		0.995493
801	80			20	0.995493
806		80		20	0.995493
807	80			20	0.995493
809		80	20		0.995493
818		20		80	0.995493
1037	85	14			0.993533
1040			14	85	0.993533
1042		14		85	0.993533
1043		14	85		0.993533
1044	85			14	0.993533
1046			14	85	0.993533
1047		14		85	0.993533
1049			14	85	0.993533
1053		14		85	0.993533
1088		12		87	0.992554
1089			12	87	0.992554
1095		12	87		0.992554
1100	87			12	0.992554
1102	87			12	0.992554
1103		12	87		0.992554
1104	12		87		0.992554
1105		12	87		0.992554
1107		12	87		0.992554
1108	14		85		0.993533
1155			12	87	0.992554
1158		87	12		0.992554
1159	87			12	0.992554
1164	85	14			0.993533
1167			85	14	0.993533
1168			14	85	0.993533
1170	85	14			0.993533
1172		85	14		0.993533
1173		85		14	0.993533
1174	85	14			0.993533
1176	85	14			0.993533
1179	14	85			0.993533
1192		22		77	0.999999
1194	77			22	0.999999
1196	77		22		0.999999
1197	77			22	0.999999
1200	77	22			0.999999
1201		22		77	0.999999
1202			77	22	0.999999
1204	77		22		0.999999
1205	77		22		0.999999
1206	77	22			0.999999
1207			77	22	0.999999
1209	77			22	0.999999
1210		22	77		0.999999
1211	22	77			0.999999
1213	77			22	0.999999
1253	80		20		0.999996
1255			20	80	0.999996
1258		20		80	0.999996
1259	80	20			0.999996
1263	80	20			0.999996
1265	80		20		0.999996
1267		20	80		0.999996
1271		10	90		0.90298
1315	90	10			0.90298
1317			90	10	0.90298
1319		90		10	0.90298
1324	90			10	0.90298
1327	90	10			0.90298
1331		10	90		0.90298
1334	10		90		0.90298
1381		10		90	0.90298
1382			10	90	0.90298
1385	90			10	0.90298
1386	90		10		0.90298
1388		10		90	0.90298
1390	78		14	7	0.999974
1396	85	14			0.999981
1399		85		14	0.999981
1400	85		14		0.999981
1402	85	14			0.999981
1403		85		14	0.999981
1404	85		14		0.999981
1405	85			14	0.999981

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain