SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene11110

Length: 1143 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene11110

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16619	1/9
SustainPine v2.0	sp_v2.0_unigene21686	5/9
SustainPine v2.0	sp_v2.0_unigene57196	2/9

Source	Descriptions	Term	Type	Identity
AutoFact	Quinone oxidoreductase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q8LDI4_ARATH	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	2-alkenal reductase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	82%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	82%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%
Blast2go	cytosol	GO:0005829	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0J2

Fln msg: your sequence is shorter than subject: 290 - 344

Fln protein: RRDLGCHSISSYISATFTPGSVITGYGVSKVVISNHPDFKEDDLVMGYIGWEEYSIIPGANGLHKIGDTDLPISYYLGVLGMPGFTAYVGFYEVGSPKVGEKVFVSAASGAVGQLVGQFAKLHGCYVVGSAGSKEKVELLKNRLGFDDAFNYKEESDLHATLKRYFPNGIDIYFENVGGEMLEAVLENMNLHGRIAACGMISEYNREEGRGIRNISRVISKRINIQGFIINDYWERYPQFVEKVRGFVVSLAVSYVEDIADGLENAPAAFAGLFEGKNIGKQVVRICDD*

Protein Length: 291

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATCTTCTTATATTTCAGCTACTTTTACACCTGGATCGGTGATAACTGGCTATGGTGTTTCCAAGGTTGTTATTTCAAATCATCCAGACTTCAAAGAAGATGATTTGGTAATGGGTTATATTGGATGGGAAGAATACAGCATAATACCTGGGGCCAATGGCTTGCACAAGATCGGAGATACGGATCTACCTATCTCATATTATTTGGGAGTTTTAGGAATGCCTGGATTCACAGCGTATGTTGGTTTTTATGAGGTGGGATCTCCTAAAGTGGGTGAAAAGGTTTTCGTTTCTGCAGCTTCTGGAGCAGTTGGACAGCTTGTTGGACAGTTCGCAAAGTTGCATGGGTGTTATGTTGTTGGGAGTGCTGGAAGCAAAGAAAAGGTGGAGTTGCTGAAAAATAGACTAGGTTTTGATGATGCATTCAATTACAAGGAGGAATCAGACTTGCATGCTACCCTTAAGAGGTACTTTCCGAACGGGATTGATATCTATTTTGAAAATGTGGGTGGTGAGATGCTTGAAGCAGTTCTTGAAAATATGAATCTCCATGGTCGTATTGCTGCTTGTGGGATGATCTCAGAATATAATCGGGAGGAAGGCCGAGGCATAAGAAACATAAGTCGTGTGATAAGCAAGCGCATAAATATACAAGGTTTCATCATAAATGATTACTGGGAGAGGTACCCTCAGTTTGTGGAGAAAGTAAGAGGCTTCGTCGTGAGCTTGGCTGTTAGTTATGTTGAAGATATCGCTGATGGCTTGGAGAATGCACCAGCTGCGTTTGCTGGTTTATTTGAAGGTAAAAACATTGGAAAGCAGGTTGTGCGCATTTGTGATGACTAA___TGAGTGCAATTATCAAATGAGTTGAGGATTTATGTCAGGTGATATAGGTGTTATTTATTCTAGGTGGAGATGACGCTGGAAAGATAAACCATGTCGTGCCCGCTTGAGTTGAGCATGACACTCGTATTTATTTAATCTTAAGGCAGGATCTCAAGTTGAGGATCCGGGCACATAGACGCTATTATTAGTGATTGGCATATTCATGATTGTGATGTGTATGTATATCTTCAATTGATATTAGGATGAAGATAGCATGAATGGTTATGTATGTTA

Fln Alignment:

Contig11110___GC-HSISSYISATFTPGSVITGYGVSKVVISNHPDFKEDDLVMGYIGWEEYSIIPGANGLHKIGDTDLPISYYLGVLGMPGFTAYVGFYEVGSPKVGEKVFVSAASGAVGQLVGQFAKLHGCYVVGSAGSKEKVELLKNRLGFDDAFNYKEESDLHATLKRYFPNGIDIYFENVGGEMLEAVLENMNLHGRIAACGMISEYNREEGRGIRNISRVISKRINIQGFIINDYWERYPQFVEKVRGFVVSLAVSYVEDIADGLENAPAAFAGLFEGKNIGKQVVRICDD
A9P0J2________________GCMRNLPSYFTPIFTPGSVINGYGVAKVVISNHPDFKEDDLVMGITGWEEYSIIPGGNQLQKIRYTDIPLSYYLGILGMPGLTAYVGFYDLSSPKAGEKVFISAASGAVGQLVGQFAKMHGCYVVGSAGSKQKVELLKDRLGFDDAFNYKEELDLHATLKRYFPNGIDIYFENVGSKMLEAVLENMNLHGRIAACGMISEYNLEEGQGIRNISRVISKRIKIQGFIIHDYWHMYPQFVEKVRGSIKEGKIVYVEDIADGLENAPAAFVGLFEGKNIGKQVVRICDE

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
498			25	75	0.996473
500		25	25	50	0.995533
501		75	25		0.996473
502		75		25	0.996473
503		25	75		0.996473
505	75	25			0.996473
507			75	25	0.996473
508			75	25	0.996473
510	75		25		0.996473
511		25		75	0.996473
514	75			25	0.996473
515		25		75	0.996473
520	25			75	0.996473
528	75		25		0.996473
551	75	25			0.996473
552	75	25			0.996473
575	33			66	0.997452
582		33		66	0.997452
608		66		33	0.997452
628	50		50		1.0
630		75		25	0.996473
670	75			25	0.996473
672	75	25			0.996473
673	75		25		0.996473
674	25	75			0.996473
680	33		66		1.0
694	33			66	0.997452
702		33		66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain