SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene11044

Length: 567 nt

UniGene Fasta

>uagpf_v2_unigene11044
CGTCGTGACCTTGGCTGTCACTCAGGTGGGTATTGTGTTTCTGTACAAGATTTAATGGGAAGGAAAGGTTCTGGAGATTCACAGCTGAGAACAGAGGATAGCATGCCTTCGATTTCAGATCAATCGAGCAGACAGGGGGAGAGCACTTCCCAGCTTCATGTTCTGGCGGTGGATGACAGTACTATGATCGAAAAGTCATCGAAAAGTTATTGAAGAATTCATGTTACAGAGTGACCACAGTGGATAGTGGAAGAAGGGCTCTGGATTTTTTGGGATTAGGAGATGATCACAACGCTGTAAATGACCTCCAGGTAAATATGATAATCACGGACTACTGTATGCCTGGAATTTCTGGCTACGATTTGCTCAAGAGAGTAAAGGAATCCTCAAAGCTCAAGGAGATTCCTGTGGTGGTCATGTCCTCTGAGAACGTGCCTTCTCGAAAGCGCAGATGTCTGGATGAAGGCGCAGAAGAGTTCATATTGAAGCCCGTGCAGATCTCAGATGTAAAACGACTGAGAGAGTATATGAGCAGAGTTCAGGAGGAAAGCAGTTATGTCCAAATGG

Ace file of the UniGene uagpf_v2_unigene11044

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene39008	4/6
SustainPine v2.0	sp_v2.0_unigene70688	2/6

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Response regulator 1 n=1 Tax=Pinus pinea RepID=C0LLL0_PINPI	-	-	3.0e-30	65%
FL-Next	tr=Response regulator 1; Pinus pinea (Italian stone pine).	-	-	0.0	66%
Blast2go	type-a response regulator	-	-	1.2697e-38	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	red light signaling pathway	GO:0010161	Biological Process	1.2697e-38	79%
Blast2go	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	1.2697e-38	79%
Blast2go	regulation of circadian rhythm	GO:0042752	Biological Process	1.2697e-38	79%
Blast2go	response to cytokinin stimulus	GO:0009735	Biological Process	1.2697e-38	79%
Blast2go	two-component response regulator activity	GO:0000156	Molecular Function	1.2697e-38	79%
Blast2go	protein binding	GO:0005515	Molecular Function	1.2697e-38	79%
Blast2go	cytoplasm	GO:0005737	Cellular Component	1.2697e-38	79%
Blast2go	nucleus	GO:0005634	Cellular Component	1.2697e-38	79%

Source	InterPros	Term	Type	Identity
Sma3	Cytosolic fatty-acid binding	IPR000463	-	-
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0LLL0

Fln msg: Distance to subject end: 25 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 130 - 184

Fln protein: QYYDRKVIEKLLKNSCYRVTTVDSGRRALDFLGLGDDHNAVNDLQVNMIITDYCMPGISGYDLLKRVKESSKLKEIPVVVMSSENVPSRKRRCLDEGAEEFILKPVQISDVKRLREYMSRVQEESSYVQM

Protein Length: 131

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTGGGTATTGTGTTTCTGTACAAGATTTAATGGGAAGGAAAGGTTCTGGAGATTCACAGCTGAGAACAGAGGATAGCATGCCTTCGATTTCAGATCAATCGAGCAGACAGGGGGAGAGCACTTCCCAGCTTCATGTTCTGGCGGTGG_-_ATGACAGTACTATGATCGAAAAGTCATCGAAAAGTTATTGAAGAATTCATGTTACAGAGTGACCACAGTGGATAGTGGAAGAAGGGCTCTGGATTTTTTGGGATTAGGAGATGATCACAACGCTGTAAATGACCTCCAGGTAAATATGATAATCACGGACTACTGTATGCCTGGAATTTCTGGCTACGATTTGCTCAAGAGAGTAAAGGAATCCTCAAAGCTCAAGGAGATTCCTGTGGTGGTCATGTCCTCTGAGAACGTGCCTTCTCGAAAGCGCAGATGTCTGGATGAAGGCGCAGAAGAGTTCATATTGAAGCCCGTGCAGATCTCAGATGTAAAACGACTGAGAGAGTATATGAGCAGAGTTCAGGAGGAAAGCAGTTATGTCCAAATGG

Fln Alignment:

Contig11044___DRKVIEKLLKNSCYRVTTVDSGRRALDFLGLGDDHNAVN--DLQVNMIITDYCMPGISGYDLLKRVKESSKLKEIPVVVMSSENVPSRKRRCLDEGAEEFILKPVQISDVKRLREYM-----SRVQEESS
C0LLL0________________DRKLIEKLLKISSYRVTAVDRVRKALQFLGLEDDEDDLNVDNIQVNMIITDYCMPGMTGYDLLRRVKESSAVKDIPVVIMSSENVESRISRCMSEGAEEFLLKPVQLSDVKKLRSHILNKGGSRDQQSTS

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
259		33	66		0.997452
260	33		66		0.997452
264	33			66	0.997452
331	66			33	0.997452
339	66	33			0.997452
340		66		33	0.997452
343			33	66	0.997452
344	66	33			0.997452
353		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain