SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene11033

Length: 539 nt

UniGene Fasta

>uagpf_v2_unigene11033
CGTCGTGACCTTGGCTGTCACTCAATTCTCTTGAGTGCTTTGTGTGCTACACGAAAGTCAGATGGTCTACTGGAAGCTGGAAAGCTGCTGCAGGAAATGGTACGAAAGGGTTTTATTCCTCGGCGTTTTGTGTATAACCGTGTTATTAATGGACTTTTTCTAACTGGAAGTCAAGAGTTTGCAAAAGAACTTCTCAGAGCGCAGAGCCAGAGTGGGCATCTTCCAAAACATATTCGTATGTAGAGGAAATGCTATTGTATTGCACCCTCATTTATATTCTCAGCCTAGATATTTGCTCAGTTTAGGTTGTACCTTGGTTTTCATGTGGGCCGGTACATGCTTTTAATGGACTTTGAGAAAGAAGGAAACCAAAAGAACACTATCCTTGCATGAAGCTTTAACCCTAACCAACTTGCAAGAAAGTCATTTTCAAGCAGAGTATGAAGGATAGCTGTTTATAGGCCAATTCACATGAGATTGGCCTTTGCTGGTAAAAGGCAGACGAATGTCCTCAGATCAGCAAAAGAAAAATGGCACGA

Ace file of the UniGene uagpf_v2_unigene11033

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene30384	2/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9R8Z2_RICCO	-	-	2.0e-37	51%
FL-Next	sp=Pentatricopeptide repeat-containing protein At1g74900, mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	55%
Blast2go	pentatricopeptide repeat-containing protein mitochondrial-like	-	-	7.34139e-39	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	gene expression	GO:0010467	Biological Process	7.34139e-39	66%
Blast2go	RNA metabolic process	GO:0016070	Biological Process	7.34139e-39	66%
Blast2go	membrane	GO:0016020	Cellular Component	7.34139e-39	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9S7R4

Fln msg: your sequence is shorter than subject: 81 - 482

Fln protein: RRDLGCHSILLSALCATRKSDGLLEAGKLLQEMVRKGFIPRRFVYNRVINGLFLTGSQEFAKELLRAQSQSGHLPKHIRM*

Protein Length: 82

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCTCTTGAGTGCTTTGTGTGCTACACGAAAGTCAGATGGTCTACTGGAAGCTGGAAAGCTGCTGCAGGAAATGGTACGAAAGGGTTTTATTCCTCGGCGTTTTGTGTATAACCGTGTTATTAATGGACTTTTTCTAACTGGAAGTCAAGAGTTTGCAAAAGAACTTCTCAGAGCGCAGAGCCAGAGTGGGCATCTTCCAAAACATATTCGTATGTAG___AGGAAATGCTATTGTATTGCACCCTCATTTATATTCTCAGCCTAGATATTTGCTCAGTTTAGGTTGTACCTTGGTTTTCATGTGGGCCGGTACATGCTTTTAATGGACTTTGAGAAAGAAGGAAACCAAAAGAACACTATCCTTGCATGAAGCTTTAACCCTAACCAACTTGCAAGAAAGTCATTTTCAAGCAGAGTATGAAGGATAGCTGTTTATAGGCCAATTCACATGAGATTGGCCTTTGCTGGTAAAAGGCAGACGAATGTCCTCAGATCAGCAAAAGAAAAATGGCACGA

Fln Alignment:

Contig11033___DLGCHSILLSALCATRKSDGLLEAGKLLQEMVRKGFIPRRFVYNRVINGLFLTGSQEFAKELLRAQSQSG
Q9S7R4________________NLDTYNILISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKFTFNRVLNGLLLTGNQAFAKEILRLQSKSG

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
306		33	66		0.997452
309		33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain