SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene11007

Length: 781 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene11007

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25245	21/26
SustainPine v2.0	sp_v2.0_unigene78780	4/26

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TCP-domain protein n=6 Tax=Andropogoneae RepID=B6SIN5_MAIZE	-	-	1.0e-23	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Blast2go	transcription factor pcf2	-	-	0.0	81%

Source	InterPros	Term	Type	Identity
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Transcription factor, TCP	IPR005333	-	-
Sma3	Transcription factor TCP subgroup	IPR017887	-	-

Full-Lengther Next Prediction

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
131		25		75	0.996473
133			25	75	0.996473
137		25		75	0.996473
138			75	25	0.996473
139		25	75		0.996473
140	25			75	0.996473
193		33		66	1.0
210	75		25		0.996473
212			25	75	0.996473
216	75			25	0.996473
217	75			25	0.996473
219		75	25		0.996473
220	75	25			0.996473
224	75	25			0.996473
282	80	20			0.995493
284		20	80		0.995493
286			80	20	0.995493
287	80		20		0.995493
289	80	20			0.995493
297			80	20	0.995493
298			20	80	0.995493
301	20		80		0.995493
302		20		80	0.995493
381	76		5		1.0
383	76	23			1.0
386			82	17	1.0
389	76	23			1.0
398	17	76		5	1.0
405		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain