SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene10994

Length: 230 nt

UniGene Fasta

>uagpf_v2_unigene10994
CGTCGTGACCTTGGCTGTCACTCATTGTTTCATGAGACATTGGGTTTTTACACATTCTCGCCTAGGAATGCGGAAACAAGAGTAACTGATTACTAAAATCTCATCAAGATGGAGTCATGTAACTGCATAGATCCGCCATGGTCAGCAGATGATCTGCTAACAAAATATCAATACATATCAGACTTCTTTATTGCACTTGCATATTTTTCTATTCCACTTGAACTCATCTA

Ace file of the UniGene uagpf_v2_unigene10994

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20917	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ethylene receptor, putative n=1 Tax=Ricinus communis RepID=B9T4T3_RICCO	-	-	4.0e-14	90%
FL-Next	sp=Ethylene receptor 2; Pelargonium hortorum (Common geranium).	-	-	0.0	85%
Blast2go	ethylene receptor	-	-	5.78674e-18	92%

Source	InterPros	Term	Type	Identity
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	-
Sma3	GAF domain	IPR003018	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain	IPR003661	-	-
Sma3	Signal transduction histidine kinase-related protein, C-terminal	IPR004358	-	-
Sma3	Signal transduction histidine kinase, core	IPR005467	-	-
Sma3	Tachykinin/Neurokinin-like, conserved site	IPR013055	-	-
Sma3	Signal transduction histidine kinase, hybrid-type, ethylene sensor	IPR014525	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9XH57

Fln msg: Distance to subject end: 700 aas, your sequence is shorter than subject: 40 - 741

Fln protein: MESCNCIDPPWSADDLLTKYQYISDFFIALAYFSIPLELI

Protein Length: 41

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTTTCATGAGACATTGGGTTTTTACACATTCTCGCCTAGGAATGCGGAAACAAGAGTAACTGATTACTAAAATCTCATCAAG_-_ATGGAGTCATGTAACTGCATAGATCCGCCATGGTCAGCAGATGATCTGCTAACAAAATATCAATACATATCAGACTTCTTTATTGCACTTGCATATTTTTCTATTCCACTTGAACTCATCTA

Fln Alignment:

Contig10994___MESCNCIDPPWSADDLLTKYQYISDFFIALAYFSIPLELI
Q9XH57________________MESCNCIEPQWPADELLMKYQYISDFFIAIAYFSIPLELI

SNPs (tot: 3)

Position	A %	G %	T %	Probability
76	50	50		1.0
180	50	50		1.0
190	66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain