SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene10929

Length: 868 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene10929

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene621	15/16

Source	Descriptions	Term	Type	Identity
AutoFact	Putative auxin response factor 6/8 n=1 Tax=Ephedra distachya RepID=E1UHX6_EPHDI	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	arf6	-	-	66%

Source	GOs	Term	Type	Identity
Blast2go	auxin mediated signaling pathway	GO:0009734	Biological Process	66%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	66%
Blast2go	protein dimerization activity	GO:0046983	Molecular Function	66%
Blast2go	nucleus	GO:0005634	Cellular Component	66%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	AUX/IAA protein	IPR003311	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Auxin response factor	IPR010525	-	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	-

Full-Lengther Next Prediction

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
338		33	66		0.997452
340	66			33	0.997452
344	66		33		0.997452
346		33		66	0.997452
347		33	66		0.997452
349		66		33	0.997452
350		66	33		0.997452
351	66		33		0.997452
356		33		66	0.997452
358	66	33			0.997452
359			66	33	0.997452
364	33			66	0.997452
432	83	16			0.994512
433			16	83	0.994512
434	83			16	0.994512
436	16	83			0.994512
437		16		83	0.994512
441			16	83	0.994512
442	83		16		0.994512
443	83	16			0.994512
448	83	16			0.994512
449	83			16	0.994512
451	16			83	0.994512
694	85	14			0.993533
826		20		80	0.995493
833			80	20	0.995493
835	80		20		0.995493
836		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain