SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene10918

Length: 776 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene10918

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6924	8/9

Source	Descriptions	Term	Type	Identity
AutoFact	peptide transporter [Hakea actites]	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	probable peptide nitrate transporter at3g54450-like	-	-	68%

Source	GOs	Term	Type	Identity
Blast2go	oligopeptide transport	GO:0006857	Biological Process	68%
Blast2go	transporter activity	GO:0005215	Molecular Function	68%
Blast2go	integral to membrane	GO:0016021	Cellular Component	68%

Source	InterPros	Term	Type	Identity
Sma3	PAK-box/P21-Rho-binding	IPR000095	-	-
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Full-Lengther Next Prediction

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
66		25	75		0.996473
72			25	75	0.996473
77			75	25	0.996473
79	75		25		0.996473
82	75		25		0.996473
85	25			75	0.996473
86		25	75		0.996473
161			75	25	0.996473
176		75		25	0.996473
327		33		66	0.997452
479		66	33		0.997452
484			33	66	0.997452
489		66		33	0.997452
492	66		33		0.997452
493		33		66	0.997452
501		33	66		0.997452
505	33			66	0.997452
506		20		80	0.995493
509		20		80	0.995493
511		80		20	0.995493
512	80		20		0.995493
515	80	20			0.995493
520		25		75	0.996473
522	75		25		0.996473
524	75	25			0.996473
526	75	25			0.996473
529		25	75		0.996473
560	75		25		0.996473
570	50		50		1.0
588		50		50	1.0
668		33		66	0.997452
675	66		33		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain