SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene10837

Length: 429 nt

UniGene Fasta

>uagpf_v2_unigene10837
CGTCGTGACCTTGGCTGTCACTCAACTCTTTTGGAGCTGTACTTGTCTGATGATCTTTGTGCACCATCATTTTCCCGATCTATTGTCCGGAGTATGGACACTTCTGCAGTTGGTTCAAGCAGGAACATTTTTGGATTGCCAAGTAGTGGAAATAGGGGTAAGGACATGAATGGAAAGGGACATGAACCTGTAGATACAGATGAACGTACAGAAAGGCTGAAAAAGGGATTGGCCTTGCTTAAGAGTGCATGGCCTTCTCATGAGGATCATCCTCGTTATGATGTTGATCTTGCAGTTGTTCTTTCTGAAATGCATCAGTTTAAGGAAGGTCGATTATTTCTATATGAGAAAATGAAACTTTACAAAGAAGTTATATCTTGTTATATGCAAGATTCAGACTATGAAGGATTGATTGCTTGTTGCAAGAGG

Ace file of the UniGene uagpf_v2_unigene10837

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3259	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	vacuolar protein sorting 11 protein [Arabidopsis thaliana] gb\|AAL32006.1\|AF436824_1 At2g05170/F5G3.7 [Arabidopsis thaliana] gb\|AAD29055.1\| expressed protein [Arabidopsis thaliana] gb\|AAO11614.1\| At2g05170/F5G3.7 [Arabidopsis thaliana] gb\|AEC05900.1\| vacuo	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	55%
Blast2go	vacuolar protein sorting-associated protein 11 homolog	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	vacuole organization	GO:0007033	Biological Process	78%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	78%
Blast2go	transporter activity	GO:0005215	Molecular Function	78%
Blast2go	plant-type vacuole membrane	GO:0009705	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-
Sma3	Vacuolar protein sorting-associated protein 11	IPR016528	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HHM1

Fln msg: Distance to subject end: 219 aas, your sequence is shorter than subject: 143 - 961

Fln protein: RRDLGCHSTLLELYLSDDLCAPSFSRSIVRSMDTSAVGSSRNIFGLPSSGNRGKDMNGKGHEPVDTDERTERLKKGLALLKSAWPSHEDHPRYDVDLAVVLSEMHQFKEGRLFLYEKMKLYKEVISCYMQDSDYEGLIACCKR

Protein Length: 144

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTCTTTTGGAGCTGTACTTGTCTGATGATCTTTGTGCACCATCATTTTCCCGATCTATTGTCCGGAGTATGGACACTTCTGCAGTTGGTTCAAGCAGGAACATTTTTGGATTGCCAAGTAGTGGAAATAGGGGTAAGGACATGAATGGAAAGGGACATGAACCTGTAGATACAGATGAACGTACAGAAAGGCTGAAAAAGGGATTGGCCTTGCTTAAGAGTGCATGGCCTTCTCATGAGGATCATCCTCGTTATGATGTTGATCTTGCAGTTGTTCTTTCTGAAATGCATCAGTTTAAGGAAGGTCGATTATTTCTATATGAGAAAATGAAACTTTACAAAGAAGTTATATCTTGTTATATGCAAGATTCAGACTATGAAGGATTGATTGCTTGTTGCAAGAGG

Fln Alignment:

Contig10837___HSTLLELYLSDDLCAPSFSRSIV---RSMDTSAVGSSRNIFGLPSSGNRGKDMNGKGHEPVDTDERTERLKKGLALLKSAWPSHEDHPRYDVDLAVVLSEMHQFKEGRLFLYEKMKLYKEVISCYMQDSDYEGLIACCKR
F6HHM1________________HNTLLELYLSNDLNFPSISLSDTVGDLNLKTRRPSGEAMMSKVESNGKVRGDCNDLTKEK----GRLERLEKGLQLLKSAWPSEMEHPLYDVDLAIILCEMNAFKEGLLYLYEKMKLYKEVIACYMQAHDHEGLIACCKR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain