SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene10805

Length: 574 nt

UniGene Fasta

>uagpf_v2_unigene10805
CGTCGTGACCTTGGCTGTCACTCAAAGATTTCCTCGCCGCCCTTCATCCACCGGTGGCAGGTTCGACTCCGATTGGATCATCAGCAAGAGAACGTCTTCGTCCCGCTCCATATAGTCGAGGAAAACGTTCGTTGCTCTGATTCTCTCTACTGCGACCACTGCAGGGTTGTAGCAGGATGGCAAGAGAACCCTGTTTGCAGGACGCGGTACCACTTTATTATACAGGCGGACAATGTGAAGGAGCAACGATGTGCCTCCTGTATCTCTGCATCCACAAGATGCAAAAAATGTGAATTGGAGATAAGCAGGGATACTGATTTGGAAGATGAAACTAAAACATGTGCGTTGGAGCTTGGCTGTTACTGATTTGGAAGATGAAACTAGGCTCGATTTAGAAGATGAAAGGCACCTGCTACATGGCATAATACATGTAAATGGGTTTGGCCACTTGCTTCGTGTGAATGGACGGGAAGGTGGTTCAAAGTATCTTTTTGGCTGTGATATTATGGGGCTATGGGACAGGATATGCATCATGCTAAAAGCCAGAAAAATTAGTGTCATGGATGTTTCAAAG

Ace file of the UniGene uagpf_v2_unigene10805

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3885	2/4
SustainPine v2.0	sp_v2.0_unigene31409	2/4

Source	Descriptions	Term	Type	Identity
AutoFact	DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RY52_RICCO	-	-	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	dna binding	-	-	56%

Source	GOs	Term	Type	Identity
Blast2go	pollen wall assembly	GO:0010208	Biological Process	56%
Blast2go	cellular response to brassinosteroid stimulus	GO:0071367	Biological Process	56%
Blast2go	tapetal layer morphogenesis	GO:0048655	Biological Process	56%
Blast2go	microgametogenesis	GO:0055046	Biological Process	56%
Blast2go	pollen germination	GO:0009846	Biological Process	56%
Blast2go	positive regulation of transcription, DNA-dependent	GO:0045893	Biological Process	56%
Blast2go	binding	GO:0005488	Molecular Function	56%
Blast2go	nucleus	GO:0005634	Cellular Component	56%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, PHD-type	IPR001965	-	0.0	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQ67

Fln msg: Separated hits, possible frame ERROR between 336 and 419, STOP codon was not found. Distance to subject end: 9 aas, your sequence is shorter than subject: 192 - 219

Fln protein: RRDLGCHSKISSPPFIHRWQVRLRLDHQQENVFVPLHIVEENVRCSDSLYCDHCRVVAGWQENPVCRTRYHFIIQADNVKEQRCASCISASTRCKKCELEISRDTDLEDETxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGIIHVNGFGHLLRVNGREGGSKYLFGCDIMGLWDRICIMLKARKISVMDVSK

Protein Length: 193

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGATTTCCTCGCCGCCCTTCATCCACCGGTGGCAGGTTCGACTCCGATTGGATCATCAGCAAGAGAACGTCTTCGTCCCGCTCCATATAGTCGAGGAAAACGTTCGTTGCTCTGATTCTCTCTACTGCGACCACTGCAGGGTTGTAGCAGGATGGCAAGAGAACCCTGTTTGCAGGACGCGGTACCACTTTATTATACAGGCGGACAATGTGAAGGAGCAACGATGTGCCTCCTGTATCTCTGCATCCACAAGATGCAAAAAATGTGAATTGGAGATAAGCAGGGATACTGATTTGGAAGATGAAACTAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGGCATAATACATGTAAATGGGTTTGGCCACTTGCTTCGTGTGAATGGACGGGAAGGTGGTTCAAAGTATCTTTTTGGCTGTGATATTATGGGGCTATGGGACAGGATATGCATCATGCTAAAAGCCAGAAAAATTAGTGTCATGGATGTTTCAAAG

Fln Alignment:

Contig10805___KISSPPFIHRWQVRLRLDHQQENVFVPLHIVEENVRCSDSLYCDHCRVVAGWQENPVCRTRYHFIIQADNVKEQRCASC-----ISASTRCKKCELEISRDTDLEDETKxxxxxxxxxxxxxxxxxxxxxxxxxxxxGIIHVNGFGHLLRVNGREGGSKYLFGCDIMGLWDRICIMLKAR
A9NQ67________________KISSPPFIQRWRVRLRLDDQDEDVFIALNIVEENVKQSDSVYCDYCRVVAGWQENPVCKTRYHFIIQADNVK-QHCASCGASVASSASSRCKACDLEISRDTDLEDETQxxxxxxxxxxxxxxxxxxxxxxxxxxxxGIIHVNGFGHLLRVNGREGGSRFLSGCDIMGLWDRICIMMKAR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain