SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene10727

Length: 448 nt

UniGene Fasta

>uagpf_v2_unigene10727
CGTCGTGACCTTGGCTGTCACTCAATCAAAGCTCAAGTTTTCAGGAGTGCAAATGCTTGGAACTATGGCTGGTTCAGGGGTGGCATTGATGCTGATGGTAGTAAGCTCAGGCTGGATGTTAATAGATCTAGTCTCTGCACAGGGCACCCTGGACCCAAATTTTTACAGCAAGACTTGTCCCAATGTGGTGCAAATTGTTGCCACTGTTGTTAACAGGCATTTGAAGCAGGACAACACTATAGGAGCTCCTATTGTTCGCATGTTCTTCCATGATTGCTTCGTGAGGGGCTGTGATGCATCTGTTTTGTTGATTTCTCCAAATAAAACTGCAGAGAGAGATGCAATTCCCAACCTCACTCTCAGCCAATTTGATGTTATTGATGAAATAAAGAGCAATTTGGAGAAAGCATGCCCAGGTGTTGTTTCCTGTGCTGATATTCTGGTTCGC

Ace file of the UniGene uagpf_v2_unigene10727

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6938	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative peroxidase [Cinnamomum micranthum f. kanehirae]	-	-	3.0e-28	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	peroxidase 27	-	-	2.36326e-33	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peroxidase.	EC:1.11.1.7	-	2.36326e-33	71%

Source	KEGGs	Term	e value	Identity
Blast2go	Phenylalanine metabolism	00360	2.36326e-33	71%
Blast2go	Methane metabolism	00680	2.36326e-33	71%
Blast2go	Phenylpropanoid biosynthesis	00940	2.36326e-33	71%
Blast2go	Biosynthesis of phenylpropanoids	01061	2.36326e-33	71%
Blast2go	Metabolic pathways	01100	2.36326e-33	71%
Blast2go	Biosynthesis of secondary metabolites	01110	2.36326e-33	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	metal ion binding	GO:0046872	Molecular Function	2.36326e-33	71%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	2.36326e-33	71%

Source	InterPros	Term	Type	Identity
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1P4

Fln msg: Distance to subject end: 196 aas, your sequence is shorter than subject: 132 - 324

Fln protein: MLGTMAGSGVALMLMVVSSGWMLIDLVSAQGTLDPNFYSKTCPNVVQIVATVVNRHLKQDNTIGAPIVRMFFHDCFVRGCDASVLLISPNKTAERDAIPNLTLSQFDVIDEIKSNLEKACPGVVSCADILVR

Protein Length: 133

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCAAAGCTCAAGTTTTCAGGAGTGCAA_-_ATGCTTGGAACTATGGCTGGTTCAGGGGTGGCATTGATGCTGATGGTAGTAAGCTCAGGCTGGATGTTAATAGATCTAGTCTCTGCACAGGGCACCCTGGACCCAAATTTTTACAGCAAGACTTGTCCCAATGTGGTGCAAATTGTTGCCACTGTTGTTAACAGGCATTTGAAGCAGGACAACACTATAGGAGCTCCTATTGTTCGCATGTTCTTCCATGATTGCTTCGTGAGGGGCTGTGATGCATCTGTTTTGTTGATTTCTCCAAATAAAACTGCAGAGAGAGATGCAATTCCCAACCTCACTCTCAGCCAATTTGATGTTATTGATGAAATAAAGAGCAATTTGGAGAAAGCATGCCCAGGTGTTGTTTCCTGTGCTGATATTCTGGTTCGC

Fln Alignment:

Contig10727___LVSAQGTLDPNFYSKTCPNVVQIVATVVNRHLKQDNTIGAPIVRMFFHDCFVRGCDASVLLIS-PNKTAERDAIPNLTLSQFDVIDEIKSNLEKACPGVVSCADIL
A9P1P4________________LTDAAGGLELNFYDKTCPGVSNVVEAVIAHYISKAPTLAAPLLRMHFHDCFVRGCDGSVLLNSTKSRKAEKEAAPNLTLRGFQVIDAAKAAVEKVCPGVVSCADIL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain