SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene10692

Length: 708 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene10692

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8346	13/14

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Homeodomain-like; Uridylate kinase [Medicago truncatula]	-	-	6.0e-28	68%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	69%
Blast2go	uridylate kinase	-	-	7.33348e-30	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	UMP kinase.	EC:2.7.4.22	-	7.33348e-30	86%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pyrimidine metabolism	00240		7.33348e-30	86%
Blast2go	Metabolic pathways	01100		7.33348e-30	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular amino acid biosynthetic process	GO:0008652	Biological Process	7.33348e-30	86%
Blast2go	pyrimidine nucleotide biosynthetic process	GO:0006221	Biological Process	7.33348e-30	86%
Blast2go	phosphorylation	GO:0016310	Biological Process	7.33348e-30	86%
Blast2go	mRNA processing	GO:0006397	Biological Process	7.33348e-30	86%
Blast2go	RNA binding	GO:0003723	Molecular Function	7.33348e-30	86%
Blast2go	DNA binding	GO:0003677	Molecular Function	7.33348e-30	86%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	7.33348e-30	86%
Blast2go	UMP kinase activity	GO:0033862	Molecular Function	7.33348e-30	86%
Blast2go	chloroplast	GO:0009507	Cellular Component	7.33348e-30	86%
Blast2go	nucleus	GO:0005634	Cellular Component	7.33348e-30	86%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Aspartate/glutamate/uridylate kinase	IPR001048	-	-
Sma3	MADF domain	IPR006578	-	-
Sma3	Uridylate kinase	IPR011817	-	-
Sma3	Uridylate kinase, bacteria	IPR015963	-	-

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
188	66		33		1.0
220			12	87	0.992554
228	87	12			0.992554
229		14	85		0.993533
230	85			14	0.993533
231	85			14	0.993533
232	85		14		0.993533
233	71		14		0.984337
234		14		85	0.993533
240		14	85		0.993533
241		85		14	0.993533
262		90	10		0.90298
263	90	10			0.90298
267			90	10	0.90298
271	10		90		0.90298
272		10	90		0.90298
273	90			10	0.90298
274	90	10			0.90298
322		20	80		0.999996
381		14	85		0.993533
383	85			14	0.993533
384		14	85		0.993533
385	85		14		0.993533
390		14	85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain