SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene10586

Length: 346 nt

UniGene Fasta

>uagpf_v2_unigene10586
CGTCGTGACCTTGGCTGTCACTCAGGTTAGTCATGGAAAAGGAAGCAGTTATTCAGGAAAAGGCATCACTTGAAGCTCAGTTAGTCTCATCTGAATCTCAAATTAAAGTCCTTGCAGATGAGGTAGAGAAGCTAGTTGGTAAGGTTGACCTCATGAGGAAAGATTATGATCAAGCTCAAGAAGAGCTCAACGTGAATCGTGCAAAGATCAAAGAATGTGATTCTCAAATCAACTCTCTTGCAAAATTGCAACACAAGCTTCAGCAGAAATTGAGTGATGGAAATATAGAAGGAAAGAAATTGGATAATGAGATCAAGCGTCTGGAGTTAGAACAGAAGGAGTGTTC

Ace file of the UniGene uagpf_v2_unigene10586

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene195	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam06470, SMC_hinge, SMC proteins Flexible Hinge Domain	-	-	1.0e-22	34%
FL-Next	sp=Structural maintenance of chromosomes protein 2-2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	48%
Blast2go	condensin complex components subunit	-	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	chromosome organization	GO:0051276	Biological Process	79%
Blast2go	ATP binding	GO:0005524	Molecular Function	79%
Blast2go	transporter activity	GO:0005215	Molecular Function	79%
Blast2go	condensin complex	GO:0000796	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	RecF/RecN/SMC	IPR003395	-	-
Sma3	SMCs flexible hinge	IPR010935	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SN90

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 248 aas, your sequence is shorter than subject: 114 - 1171

Fln protein: S*PWLSLRLVMEKEAVIQEKASLEAQLVSSESQIKVLADEVEKLVGKVDLMRKDYDQAQEELNVNRAKIKECDSQINSLAKLQHKLQQKLSDGNIEGKKLDNEIKRLELEQKEC

Protein Length: 115

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTAGTCATGGAAAAGGAAGCAGTTATTCAGGAAAAGGCATCACTTGAAGCTCAGTTAGTCTCATCTGAATCTCAAATTAAAGTCCTTGCAGATGAGGTAGAGAAGCTAGTTGGTAAGGTTGACCTCATGAGGAAAGATTATGATCAAGCTCAAGAAGAGCTCAACGTGAATCGTGCAAAGATCAAAGAATGTGATTCTCAAATCAACTCTCTTGCAAAATTGCAACACAAGCTTCAGCAGAAATTGAGTGATGGAAATATAGAAGGAAAGAAATTGGATAATGAGATCAAGCGTCTGGAGTTAGAACAGAAGGAGTGTTC

Fln Alignment:

Contig10586___RLVMEKEAVIQEKASLEAQLVSSESQIKVLADEVEKLVGKVDLMRKDYDQAQEELNVNRAKIKECDSQINSLAXXXXXXXXXXSDGNIEGKKLDNEIKRLELEQKEC
Q9SN90________________RLVMEQEAVTQEQSYLKSQLTSLRTQISTLASDVGNQRAKVDAIQKDHDQSLSELKLIHAKMKECDTQISGSIAEQEKCLQKISDMKLDRKKLENEVTRMEMEHKNC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain