SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene10585

Length: 385 nt

UniGene Fasta

>uagpf_v2_unigene10585
CGTCGTGACCTTGGCTGTCACTCAATCTTTATACATTGTCTTTTCCTGTCTTTCATTCTCCCCGTTTCTCCTCCTCATTCCTCCTTTCACGGAGTGCAGGGCCATCTGTAACCCTCCCTCCATTGCTTTCATGTGCACATCCATTTCATGTCTGCAACAGACAATCACATTACTGAAAGGAAAGAGCAGGAACGGAAGATGAGCTGCAACGGCTGCAGAGTCCTGCGCAAAGGCTGCAGCGAAAATTGCATTCTCAGGCAATCCCTTCAGTGGATCGAAAGTCCGCAATCGCAGGCCCACGCTACCGTCTTTGTCGCAAAGTTCTTCGGCCGTGCAGGTCTCATGACATTCATCGCTGCTGTCTCAGAGCCGGAAAGGCCCGGTA

Ace file of the UniGene uagpf_v2_unigene10585

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene411	3/5
SustainPine v2.0	sp_v2.0_unigene35684	1/5

Source	Descriptions	Term	Type	Identity
AutoFact	LOB domain-containing protein 37 n=2 Tax=Arabidopsis RepID=LBD37_ARATH	-	-	47%
FL-Next	sp=LOB domain-containing protein 38; Arabidopsis thaliana (Mouse-ear cress).	-	-	80%
Blast2go	protein	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	nitrogen compound metabolic process	GO:0006807	Biological Process	0.0	79%
Blast2go	simple leaf morphogenesis	GO:0060776	Biological Process	0.0	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Lateral organ boundaries, LOB	IPR004883	-	0.0	-
Sma3	Asymmetric leaves, AS2/LOB	IPR017414	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9SN23

Fln msg: Distance to subject end: 185 aas, your sequence is shorter than subject: 79 - 247

Fln protein: MSATDNHITERKEQERKMSCNGCRVLRKGCSENCILRQSLQWIESPQSQAHATVFVAKFFGRAGLMTFIAAVSEPERPG

Protein Length: 80

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTTTATACATTGTCTTTTCCTGTCTTTCATTCTCCCCGTTTCTCCTCCTCATTCCTCCTTTCACGGAGTGCAGGGCCATCTGTAACCCTCCCTCCATTGCTTTCATGTGCACATCCATTTC_-_ATGTCTGCAACAGACAATCACATTACTGAAAGGAAAGAGCAGGAACGGAAGATGAGCTGCAACGGCTGCAGAGTCCTGCGCAAAGGCTGCAGCGAAAATTGCATTCTCAGGCAATCCCTTCAGTGGATCGAAAGTCCGCAATCGCAGGCCCACGCTACCGTCTTTGTCGCAAAGTTCTTCGGCCGTGCAGGTCTCATGACATTCATCGCTGCTGTCTCAGAGCCGGAAAGGCCCGGTA

Fln Alignment:

Contig10585___MSCNGCRVLRKGCSENCILRQSLQWIESPQSQAHATVFVAKFFGRAGLMTFIAAVSEPERP
Q9SN23________________MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQCP

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
300		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain