SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene10548

Length: 318 nt

UniGene Fasta

>uagpf_v2_unigene10548
CGTCGTGACCTTGGCTGTCACTCATTATTTTACCGATATCTTGGTCATGGATGGATCACAGACTAGCAGCACTAGCAATGCTCCCCCACCTTTCCTCACAAAGACCTATGACATGGTAGATGATCCAGCGACAGACTCGATAGTGTCATGGAGCCCTGGCAATAACAGTTTTATTGTTTGGAATCCACCTGAATTTGCTCGAGACCTTCTTCCAAAGTATTTCAAACACAACAATTTTTCAAGCTTCGTGAGACAACTAAACACATATGGGTTTAGAAAAGTTGATCCAGATCGATGGGAATTTGCAAACGAAGGTTT

Ace file of the UniGene uagpf_v2_unigene10548

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10838	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock factor protein HSF8, putative n=1 Tax=Ricinus communis RepID=B9SNT1_RICCO	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	heat shock factor	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	response to stress	GO:0006950	Biological Process	91%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	91%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	91%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	91%
Blast2go	protein binding	GO:0005515	Molecular Function	91%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	91%
Blast2go	nucleus	GO:0005634	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock factor (HSF)-type, DNA-binding	IPR000232	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUX6

Fln msg: Distance to subject end: 347 aas, your sequence is shorter than subject: 105 - 489

Fln protein: VVTLAVTHYFTDILVMDGSQTSSTSNAPPPFLTKTYDMVDDPATDSIVSWSPGNNSFIVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEG

Protein Length: 106

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTATTTTACCGATATCTTGGTCATGGATGGATCACAGACTAGCAGCACTAGCAATGCTCCCCCACCTTTCCTCACAAAGACCTATGACATGGTAGATGATCCAGCGACAGACTCGATAGTGTCATGGAGCCCTGGCAATAACAGTTTTATTGTTTGGAATCCACCTGAATTTGCTCGAGACCTTCTTCCAAAGTATTTCAAACACAACAATTTTTCAAGCTTCGTGAGACAACTAAACACATATGGGTTTAGAAAAGTTGATCCAGATCGATGGGAATTTGCAAACGAAGGTTT

Fln Alignment:

Contig10548___PPPFLTKTYDMVDDPATDSIVSWSPGNNSFIVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEG
A9NUX6________________PPPFLTKTYDMVEDPLTDTVVSWSSTNNSFVVWNSHLFSSDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain