SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene10513

Length: 1157 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene10513

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16510	31/38
SustainPine v2.0	sp_v2.0_unigene63993	3/38

Source	Descriptions	Term	Type	Identity
AutoFact	cystinosin [Arabidopsis thaliana] sp\|P57758.1\|CTNS_ARATH RecName: Full=Cystinosin homolog dbj\|BAB08539.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAK97727.1\| AT5g40670/MNF13_190 [Arabidopsis thaliana] gb\|AAL31135.1\| AT5g40670/MNF13_190 [Arabidop	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	cystinosin homolog	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cystinosin/ERS1p repeat	IPR006603	-	0.0	-
Sma3	Lysosomal cystine transporter	IPR005282	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRH3

Fln msg:

Fln protein: MGSWNSIPLEVIYQILGWFAFGVWSISFYPQVILNYRRKSVVGLNFDFLIFNLTKHSSYLIYNASLFFSPVVQRQYHEKYGYNEMIPVAANDVAFSIHAVLLTAFTIIQVFIYERGTQKVSRVCTGITITVWGYAAVCLILAWPNGSWLWLVTSFNFIQVMMTTIKYMPQAYMNFLRKSTEGWSIGNIFLDLSGGLANFAQMGVQSIDQDSLENFYGNVGKLLLSLESVFFDVLFLLQHYLLYPKTKVEDGTAGENVERLLNKPPKESDHEV*

Protein Length: 274

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATAATTAACTGACTGCGTTTTTCGACAATTTTAAGACAATAAGCCAGCCATTTCCTCTGATTCCATTCCATTGTGGTACTGGTGTGAGTTCTCTGTCCATCTCTCGTTCGTCTGATCGATCGATCGAGGTGGGTTAGCCG_-_ATGGGGTCGTGGAATAGTATTCCTCTGGAAGTGATATACCAAATACTCGGATGGTTTGCCTTTGGTGTCTGGTCTATCAGCTTCTACCCTCAAGTTATTCTCAATTACCGTCGAAAGAGTGTGGTGGGATTGAACTTCGACTTCTTGATATTTAATCTCACCAAGCATTCCAGTTATCTCATATACAACGCATCCTTATTCTTCAGTCCCGTAGTGCAGCGCCAGTATCATGAAAAATATGGCTACAATGAGATGATTCCTGTAGCTGCAAATGATGTTGCTTTCTCAATACATGCAGTGCTTCTTACAGCCTTTACCATAATTCAAGTCTTCATCTATGAAAGAGGAACACAAAAAGTTTCAAGGGTATGCACAGGGATCACTATCACAGTATGGGGTTATGCTGCAGTCTGTTTAATCTTAGCTTGGCCTAATGGTTCATGGCTTTGGCTTGTGACTAGTTTCAACTTTATCCAAGTTATGATGACTACAATCAAATACATGCCCCAGGCATACATGAATTTCCTGCGGAAGAGCACAGAAGGATGGAGCATAGGAAACATTTTCCTGGATCTGTCTGGTGGGCTTGCGAACTTTGCACAAATGGGTGTGCAATCTATTGATCAAGATTCCCTGGAAAACTTTTATGGCAATGTAGGGAAACTTCTTCTATCACTGGAATCGGTCTTTTTTGATGTACTATTCCTACTGCAGCATTATTTGCTGTATCCCAAAACAAAAGTGGAAGATGGGACTGCTGGTGAAAACGTAGAACGGCTTCTAAACAAACCACCCAAGGAGAGTGATCACGAAGTTTAA___GTGTTCTAATGCATTATATAACTGTAATTCGATATGTAGCTTATCAATTGTGTCTTAACTAGGCATAACCATTGTGAAATACAAGTCCATTCTTCCCGCTTCTTAGCCTCTGGCAATTGTGATAATTCGTTTCACTTATTTTAAGTATGGCCACAACCAATTATATGGGTTAC

Fln Alignment:

Contig10513___MGSWNSIPLEVIYQILGWFAFGVWSISFYPQVILNYRRKSVVGLNFDFLIFNLTKHSSYLIYNASLFFSPVVQRQYHEKYGYNEMIPVAANDVAFSIHAVLLTAFTIIQVFIYERGTQKVSRVCTGITITVWGYAAVCLILAWPNGSWLWLVTSFNFIQVMMTTIKYMPQAYMNFLRKSTEGWSIGNIFLDLSGGLANFAQMGVQSIDQDSLENFYGNVGKLLLSLESVFFDVLFLLQHYLLYPKTKVEDGTAGENVERLLNKPPKESDHEV
A9NRH3________________MGSWNSVPLEVIYQIFGWFAFGVWSISFYPQLILNYRRKSVVGLNFDFLVFNLTKHSAYLIYNASVFFSPVVQRQYHEKYGYNEMIPVAANDVAFSIHAVLLTAFTIFQVFIYERGTQKVSRVCIGITMTAWGYAAVSLILAWPNGSWLWLVTCFNLIQVIMTTIKYIPQAYMNFMRKSTEGWSIGNILLDLSGGLANFAQMGMQSIDQDSLENFYGNIGKLLLSLETVIFDVLFIVQHYVLYPKTKVEDGTAGENVERHLNKPLKESDHEV

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
80		66	33		0.997452
88		66	33		0.997452
89		66	33		0.997452
90	66	33			0.997452
92			33	66	0.997452
93		66		33	0.997452
96		33		66	0.997452
98		33	66		0.997452
99	33			66	0.997452
271			10	90	0.90298
277		90		10	0.90298
279	90		10		0.90298
280	90	10			0.90298
281	90			10	0.90298
283	88			11	0.923564
284		10	90		0.90298
425		87	12		0.992554
430		12	87		0.992554
434		87	12		0.992554
435	87	12			0.992554
436	87			12	0.992554
437	87		12		0.992554
439		12	87		0.992554
442		12	87		0.992554
443	12			87	0.992554
459		25		75	1.0
487	50			50	1.0
532		42	57		1.0
536	57		42		1.0
539	42	57			1.0
540	57	42			1.0
542	57			42	1.0
543			57	42	1.0
546	57	42			1.0
548		57	42		1.0
549	57			42	1.0
551	42			57	1.0
552	57	42			1.0
659	85	14			0.993533
660	85		14		0.993533
664	83		16		0.994512
665	80			20	0.995493
666			20	80	0.995493
669	80	20			0.995493
673		80	20		0.995493
674		80		20	0.995493
677		20	80		0.995493
678			80	20	0.995493
1060		30	70		1.0
1079		33		66	1.0
1098		40	60		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
139	152	GATC GATC GATC GA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain