SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene10508

Length: 385 nt

UniGene Fasta

>uagpf_v2_unigene10508
CGTCGTGACCTTGGCTGTCACTCAATCTCGAACTTATGGGGGTACAGGAATTGGCCTCAGTATTAGCCGATGCTTGATTGAATTAATGGGCGGTGAGATAAGATTTATAAGCCGTCCAGGTATTGGAAGTACATTTTCTTTCACTGCTTTGTTCAAAGTGGGCCAAGCGGGTGCTGATGGTGACGGTGATTTACTACGAGGTGCAAGACTGCCGACTCATTTCAAGGGCATGAAGGCACTTGTATTGGATGGTAACCCAGTACGTTCCCTAGTCACGAAATACCATTTACAGAGGTTTGGCATAGAGGTGGACAGCATTACTAGTTCTAAAGTGGCTTTATCTATGCTGAATGGAATGGATGGTTTTCCTACAGAAGGTTGTAGC

Ace file of the UniGene uagpf_v2_unigene10508

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene830	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to cytokinin receptor 1 n=1 Tax=Vitis vinifera RepID=UPI00019828F5	-	-	55%
FL-Next	Isoform 2 of Histidine kinase 4 OS=Arabidopsis thaliana GN=AHK4	-	-	58%
Blast2go	histidine kinase	-	-	66%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoprotein phosphatase.	EC:3.1.3.16	-	0.0	66%

Source	GOs	Term	Type	Identity
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	66%
Blast2go	cellular response to sucrose stimulus	GO:0071329	Biological Process	66%
Blast2go	response to water deprivation	GO:0009414	Biological Process	66%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	66%
Blast2go	regulation of meristem development	GO:0048509	Biological Process	66%
Blast2go	regulation of shoot development	GO:0048831	Biological Process	66%
Blast2go	embryonic root morphogenesis	GO:0010086	Biological Process	66%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	66%
Blast2go	regulation of seed germination	GO:0010029	Biological Process	66%
Blast2go	leaf senescence	GO:0010150	Biological Process	66%
Blast2go	cytokinin mediated signaling pathway	GO:0009736	Biological Process	66%
Blast2go	sulfate transport	GO:0008272	Biological Process	66%
Blast2go	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	66%
Blast2go	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	66%
Blast2go	osmosensor activity	GO:0005034	Molecular Function	66%
Blast2go	protein histidine kinase binding	GO:0043424	Molecular Function	66%
Blast2go	cytokine binding	GO:0019955	Molecular Function	66%
Blast2go	transmembrane histidine kinase cytokinin receptor activity	GO:0009885	Molecular Function	66%

Source	InterPros	Term	Type	Identity
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain	IPR003661	-	-
Sma3	Signal transduction histidine kinase-related protein, C-terminal	IPR004358	-	-
Sma3	Signal transduction histidine kinase, core	IPR005467	-	-
Sma3	CHASE	IPR006189	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C5U0-2

Fln msg: Distance to subject end: 244 aas, your sequence is shorter than subject: 128 - 1057

Fln protein: VVTLAVTQSRTYGGTGIGLSISRCLIELMGGEIRFISRPGIGSTFSFTALFKVGQAGADGDGDLLRGARLPTHFKGMKALVLDGNPVRSLVTKYHLQRFGIEVDSITSSKVALSMLNGMDGFPTEGCS

Protein Length: 129

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTCGAACTTATGGGGGTACAGGAATTGGCCTCAGTATTAGCCGATGCTTGATTGAATTAATGGGCGGTGAGATAAGATTTATAAGCCGTCCAGGTATTGGAAGTACATTTTCTTTCACTGCTTTGTTCAAAGTGGGCCAAGCGGGTGCTGATGGTGACGGTGATTTACTACGAGGTGCAAGACTGCCGACTCATTTCAAGGGCATGAAGGCACTTGTATTGGATGGTAACCCAGTACGTTCCCTAGTCACGAAATACCATTTACAGAGGTTTGGCATAGAGGTGGACAGCATTACTAGTTCTAAAGTGGCTTTATCTATGCTGAATGGAATGGATGGTTTTCCTACAGAAGGTTGTAGC

Fln Alignment:

Contig10508___SRTYGGTGIGLSISRCLIELMGGEIRFISRPGIGSTFSFTA-LFKVGQXXXXXXXXXXXXXXXPTHFKGMKALVLDGNPVRSLVTKYHLQRFGIEVDSITSSKVAL
Q9C5U0-2______________SRNYGGTGIGLSISKCLVELMRGQINFISRPHIGSTFWFTAVLEKCDKCSAINHMKKPNVEHLPSTFKGMKAIVVDAKPVRAAVTRYHMKRLGINVDVVTSLKTAV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain