SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene10483

Length: 278 nt

UniGene Fasta

>uagpf_v2_unigene10483
TGTACTTGACCTTGGCTGTCACTCATTATTGTGAGAGTTCTTTTTGATAAAACTTCCAAAAGTCCCTTCCCTCCATCTAAAGATGGAAAAGAATCCAAGTACAGATCCTATTGTGATTATTTTGAGAAAAGATATCAAAGGCAACTCAAACATGTCAACCAACCTCTTCTACTACTGAAGCAGACTCATCGCCCTTACAATCTCCTTGTCAACCATATTGACGTTAAAGAAAAGACCAGGTTCCAACATTGAAGTCAATGAAGCTAATTATGTAGAGC

Ace file of the UniGene uagpf_v2_unigene10483

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20637	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dicer-like 3 n=1 Tax=Physcomitrella patens RepID=B3SRQ0_9BRYO	-	-	4.0e-08	46%
FL-Next	sp=Endoribonuclease Dicer homolog 3a; Oryza sativa subsp. japonica (Rice).	-	-	0.0	48%
Blast2go	endoribonuclease dicer homolog 3a-like	-	-	2.00543e-11	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	maintenance of DNA methylation	GO:0010216	Biological Process	2.00543e-11	65%
Blast2go	production of miRNAs involved in gene silencing by miRNA	GO:0035196	Biological Process	2.00543e-11	65%
Blast2go	production of ta-siRNAs involved in RNA interference	GO:0010267	Biological Process	2.00543e-11	65%
Blast2go	double-stranded RNA binding	GO:0003725	Molecular Function	2.00543e-11	65%
Blast2go	protein binding	GO:0005515	Molecular Function	2.00543e-11	65%
Blast2go	nucleolus	GO:0005730	Cellular Component	2.00543e-11	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q5N870

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 660 aas, your sequence is shorter than subject: 84 - 1651

Fln protein: CT*PWLSLIIVRVLFDKTSKSPFPPSKDGKESKYRSYCDYFEKRYQRQLKHVNQPLLLLKQTHRPYNLLVNHIDVKEKTRFQH*

Protein Length: 85

Fln nts: TGTACTTGACCTTGGCTGTCACTCATTATTGTGAGAGTTCTTTTTGATAAAACTTCCAAAAGTCCCTTCCCTCCATCTAAAGATGGAAAAGAATCCAAGTACAGATCCTATTGTGATTATTTTGAGAAAAGATATCAAAGGCAACTCAAACATGTCAACCAACCTCTTCTACTACTGAAGCAGACTCATCGCCCTTACAATCTCCTTGTCAACCATATTGACGTTAAAGAAAAGACCAGGTTCCAACATTGAAGTCAATGAAGCTAATTATGTAGAGC

Fln Alignment:

Contig10483___SPFPPSKDGKESKYRSYCDYFEKRYQRQLKHVNQPLLLLKQTHRPYNLL
Q5N870________________SAFDGASDKKECKFRTFAEYFKKKYGIVLRHPSQPLLVLKPSHNPHNLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain