SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene10414

Length: 275 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene10414
AAGTAAGAAAAGTCACACATTTGAATATTTTAAGCAGTTCAGAAACATGATTGAAAAGCAAACAGGGAAGCATATAAAAATTCTCTACTCCGATCAAAAGGGAGAATATAGGAATGATGAACTTATCAAGTATTGTAAATACCATGGGATATTATAGCAATTCACAATATCCCATACTCCTCAGCAGAATGGAGAAATGGAAAGAAATAACAGAACATTGGTGGAATGTGCTACGAGCATGTTGAAAGGTATGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene10414 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20052	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gag-Pol polyprotein n=1 Tax=Lotus japonicus RepID=B8YLY7_LOTJA	-	-	2.0e-16	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	gag-pol polyprotein	-	-	5.71491e-20	67%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Distance to subject end: 144 aas, your sequence is shorter than subject: 91 - 407

Fln protein: SKKSHTFEYFKQFRNMIEKQTGKHIKILYSDQKGEYRNDELIKYCKYHGIL*QFTISHTPQQNGEMERNNRTLVECATSMLKGMSDSQGHD

Protein Length: 92

Fln nts: AAGTAAGAAAAGTCACACATTTGAATATTTTAAGCAGTTCAGAAACATGATTGAAAAGCAAACAGGGAAGCATATAAAAATTCTCTACTCCGATCAAAAGGGAGAATATAGGAATGATGAACTTATCAAGTATTGTAAATACCATGGGATATTATAGCAATTCACAATATCCCATACTCCTCAGCAGAATGGAGAAATGGAAAGAAATAACAGAACATTGGTGGAATGTGCTACGAGCATGTTGAAAGGTATGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

Contig10414___KSHTFEYFKQFRNMIEKQTGKHIKILYSDQKGEYRNDELIKYCKYHGIL*QFTISHTPQQNGEMERNNRTLVECATSML
B8LKX7________________KDEVFEKFKEFKAFVEKQSGKSIKILRTDNGKEYVNKEFDHYCKYNGIKREHTVPYTPQQNGVAERKNRTLMEMARCML

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain