SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene10364

Length: 897 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene10364

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene141	10/11

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Clathrin heavy chain, putative; 28833-19741 n=27 Tax=Magnoliophyta RepID=Q9SRM1_ARATH	-	-	0.0	85%
FL-Next	tr=Clathrin heavy chain, putative; Ricinus communis (Castor bean).	-	-	0.0	90%

Source	InterPros	Term	Type	Identity
Sma3	Clathrin, heavy chain/VPS, 7-fold repeat	IPR000547	-	-
Sma3	Clathrin, heavy chain, linker/propeller domain	IPR016025	-	-
Sma3	Clathrin, heavy chain, linker, core motif	IPR015348	-	-
Sma3	Clathrin, heavy chain, propeller, N-terminal	IPR001473	-	-
Sma3	Clathrin, heavy chain	IPR016341	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SQP2

Fln msg: Overlapping hits, possible frame ERROR between 536 and 527, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 1216 aas, your sequence is shorter than subject: 298 - 1705

Fln protein: S*PWLSLKRSQALEAHAAAFASFKVPGNENPSILISFASKTMVGGQLTSKLHVIELGAQPGKPGFSKKQADLFFPPDFADDFPVAMQISNKYSLIYVITKLGLLFVYDLDTATAVYRNRISPDPIFLTTEASSIGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLELAVNLAxxxxxVLELKTLVVQRFQELFSQMKYKEAAELAAESPQGILRTPDTVAKFQSVPVQPGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLA

Protein Length: 299

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGCGCAGTCAAGCTCTAGAAGCCCATGCTGCAGCATTTGCATCTTTTAAGGTTCCTGGGAATGAAAATCCTTCTATCCTTATTTCATTTGCTTCAAAAACCATGGTTGGAGGGCAGCTTACATCAAAGTTACACGTGATTGAGCTTGGTGCACAGCCAGGTAAACCAGGATTTTCGAAGAAACAGGCAGATCTCTTTTTTCCACCAGATTTTGCCGATGATTTTCCAGTGGCTATGCAGATATCAAACAAGTATAGTCTGATATATGTCATCACAAAGCTGGGACTTCTGTTTGTCTATGATTTGGATACTGCTACAGCAGTTTACAGGAATCGTATCAGTCCAGATCCCATTTTCTTAACAACAGAAGCTTCGTCAATTGGCGGATTCTATGCTATCAATCGCCGAGGCCAAGTGTTGCTTGCAACTGTCAATGAAGCAACTATTGTGCCTTTTGTTAGTGGACAGCTGAATAATCTAGAGCTTGCTGTGAATCTTGCTxxxxxxxxxxxxxxxGTCCTGGAGCTGAAAACTCTGGTTGTCCAGCGTTTCCAGGAGTTGTTTTCTCAAATGAAGTATAAAGAAGCTGCAGAACTAGCTGCCGAGTCACCTCAAGGCATTCTCCGCACACCAGATACGGTGGCAAAATTCCAGAGTGTTCCAGTACAGCCTGGGCAGACACCACCCCTTCTACAATATTTTGGGACTCTTCTGACTAGGGGAAAGTTGAATGCATTTGAGTCTTTGGAACTTTCACGATTAGTTGTAAATCAGAACAAGAAAAATCTGTTGGAGAATTGGCTTGCTGAGGATAAGCTGGAGTGCAGTGAGGAATTGGGGGATCTTGTGAAGACTGTGGACAATGACCTTGCTTT

Fln Alignment:

Contig10364___KRSQXXXXXXXXXXSFKVPGNENPSILISFASKTMVGGQLTSKLHVIELGAQPGKPGFSKKQXXXXXXXXXXXXXXXXMQISNKYSLIYVITKLGLLFVYDLDTATAVYRNRISPDPIFLTTEASSIGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLELAVNLAxxxxVLELKTLVVQRFQELFSQMKYKEAAELAAESPQGILRTPDTVAKFQSVPVQPGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLA
B9SQP2________________QRSQALEAHAAAFAQFKVPGNENPSTLISFATKTFNAGQITSKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYSLIYVITKLGLLFVYDLETASAVYRNRISPDPIFLTAEASSAGGFYSINRRGQVLLATVNEATIVPFVSGQLNNLELAVNLAxxxxLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQTGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLA

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
243		33	66		0.997452
533	66	33			1.0
534	66		33		1.0
535	66			33	1.0
537		66	33		1.0
540	33			66	1.0
544			66	33	1.0
552	66			33	1.0
553	66	33			1.0
558	33			66	1.0
627	85	14			0.993533
630		85	14		0.993533
637	85			14	0.993533
641	85			14	0.993533
642			14	85	0.993533
646	14	85			0.993533
648			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain