SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene10326

Length: 571 nt

UniGene Fasta

>uagpf_v2_unigene10326
CGTCGTGACCTTGGCTGTCACTCAAATTCTGGTGGCCCGCCTCTCCCTTTCAAACCCTGGACTCATATACAAATATCACGCTTTGGAAGCACTGTGATGATCAAATTCCTGATACCATTCCGCGTGGATTACCGGAGCACAAGTTGAGTTTATGTGGCCAAGATTGGCACTACAGCTTGAGCCCACTTTTAGACTTAGAGTACAGACCCTTCTGTGATGCATTTCAACTACCAATTTATAAGGTCTCCCCTCCATTCTCCATTAATAACCAGACTTTACTGCACGAGGGTTTTGAGGTAACCTGGCACGTCGATTCCAACAGATACCAGAGCTGTGATGATTGTTTGAATAGCAATGGGAGATGTGGTTACAACATTTCAAAACCGACAACCTTTCTTTGCTATTGTCCCGACGGCAGCACGCATCCAGACGAATGCAGAGATACGGATACTGAAGATACGAGAGATGAAAACTTGTCGGCAATTGCAATAGGTTGCATCATTGTGGGAGTTGCGGTGATATCAATAGCCTTAGCACTAATCCTGTTCTCAGCGTATGATGCCTGCAAGGG

Ace file of the UniGene uagpf_v2_unigene10326

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10527	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative wall-associated protein kinase (Fragment) n=7 Tax=Pinus taeda RepID=Q5FYH5_PINTA	-	-	5.0e-18	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Blast2go	wall-associated protein kinase	-	-	8.69581e-29	57%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMQ9

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 12 aas, your sequence is shorter than subject: 189 - 319

Fln protein: S*PWLSLKFWWPASPFQTLDSYTNITLWKHCDDQIPDTIPRGLPEHKLSLCGQDWHYSLSPLLDLEYRPFCDAFQLPIYKVSPPFSINNQTLLHEGFEVTWHVDSNRYQSCDDCLNSNGRCGYNISKPTTFLCYCPDGSTHPDECRDTDTEDTRDENLSAIAIGCIIVGVAVISIALALILFSAYDACK

Protein Length: 190

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTCTGGTGGCCCGCCTCTCCCTTTCAAACCCTGGACTCATATACAAATATCACGCTTTGGAAGCACTGTGATGATCAAATTCCTGATACCATTCCGCGTGGATTACCGGAGCACAAGTTGAGTTTATGTGGCCAAGATTGGCACTACAGCTTGAGCCCACTTTTAGACTTAGAGTACAGACCCTTCTGTGATGCATTTCAACTACCAATTTATAAGGTCTCCCCTCCATTCTCCATTAATAACCAGACTTTACTGCACGAGGGTTTTGAGGTAACCTGGCACGTCGATTCCAACAGATACCAGAGCTGTGATGATTGTTTGAATAGCAATGGGAGATGTGGTTACAACATTTCAAAACCGACAACCTTTCTTTGCTATTGTCCCGACGGCAGCACGCATCCAGACGAATGCAGAGATACGGATACTGAAGATACGAGAGATGAAAACTTGTCGGCAATTGCAATAGGTTGCATCATTGTGGGAGTTGCGGTGATATCAATAGCCTTAGCACTAATCCTGTTCTCAGCGTATGATGCCTGCAAGGG

Fln Alignment:

Contig10326___KFWWPASPFQTLDSYTNITLWKHCDDQIPDTIPRGLPEHKLSLCGQDWHYSLSPLLDLEYRPFCDA-FQLPIY-KVSPPFSINNQTLLHEGFEVTWHVDSNRYQSCDDCLNSNGRCGYNISKPTTFLCYCPDGSTHP
A9NMQ9________________EFWWPASHFHIAHGYANLTLWRHCNESM-----NGESFQKWRLCGDDW-YSISNAES--GRRFCKTNLQLPISNKLSIKQNDDLNTALSFGFDMTWSVDTKRDRSCDACLDSKGSCGFDILNPTTFLCYCFDSTSHP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain