SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene10268

Length: 145 nt

UniGene Fasta

>uagpf_v2_unigene10268
CGTCGTGACCTTGGCTGTCACTCAACTGGAGGAAGTGGCACTTTACAGGAAGCAGCTTGAGTTGAAGATTCGTGGAAAAGATATACCGAAACCTGTGAAGACATGGAACCAGACTGGATTGACTCGTAATGTCCTTGAAGTCATC

Ace file of the UniGene uagpf_v2_unigene10268

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20302	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SW84_RICCO	-	-	84%
FL-Next	sp=DEAD-box ATP-dependent RNA helicase 42; Oryza sativa subsp. japonica (Rice).	-	-	69%
Blast2go	dead-box atp-dependent rna helicase 42-like	-	-	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	90%

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Protein-tyrosine phosphatase-like, PTPLA	IPR007482	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-
Sma3	Intermediate filament protein, conserved site	IPR018039	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q84UQ1

Fln msg: Distance to subject end: 610 aas, your sequence is shorter than subject: 48 - 1049

Fln protein: VVTLAVTQLEEVALYRKQLELKIRGKDIPKPVKTWNQTGLTRNVLEVI

Protein Length: 49

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTGGAGGAAGTGGCACTTTACAGGAAGCAGCTTGAGTTGAAGATTCGTGGAAAAGATATACCGAAACCTGTGAAGACATGGAACCAGACTGGATTGACTCGTAATGTCCTTGAAGTCATC

Fln Alignment:

Contig10268___EEVALYRKQLELKIRGKDIPKPVKTWNQTGLTRNVLEVI
Q84UQ1________________EEVAAYRKQLELKVHGKDVPKPIKTWVQSGLTSKLLDTI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain