SustainPineDB

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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene10261

Length: 317 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene10261
GTAATGTGGCTCACTTCATTGTAGTGATGTCTACAAATTCAACTGGCGAGGTAGCTCATATCTTCATCAAGGAGATAATGAGGTTGCATGTTTTTCCCAAGAATATCATATCAGACAGAGATTCCAAGTTCACCTCCACGTTTTGGAAGGAGTTGTTTGCAAGCTTGGGGATAGAGTTGGCTTTCAATACAACTTATCATCCACAAACAAATGGACATACAATGATCCAAAATGGATCCTTCAATACTTAAAAACTATCGCATGAGAAAAACCTTTACAACGGGCGGATTATATGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene10261 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20501	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F5K24.1 protein n=1 Tax=Arabidopsis thaliana RepID=Q9ZPF9_ARATH	-	-	2.0e-16	48%
FL-Next	tr=F5K24.1 protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	48%
Blast2go	gag-pol polyprotein	-	-	4.68599e-19	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	4.68599e-19	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q9ZPF9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 174 aas, your sequence is shorter than subject: 83 - 1138

Fln protein: NVAHFIVVMSTNSTGEVAHIFIKEIMRLHVFPKNIISDRDSKFTSTFWKELFASLGIELAFNTTYHPQTNGHTMIQNGSFNT*

Protein Length: 84

Fln nts: GTAATGTGGCTCACTTCATTGTAGTGATGTCTACAAATTCAACTGGCGAGGTAGCTCATATCTTCATCAAGGAGATAATGAGGTTGCATGTTTTTCCCAAGAATATCATATCAGACAGAGATTCCAAGTTCACCTCCACGTTTTGGAAGGAGTTGTTTGCAAGCTTGGGGATAGAGTTGGCTTTCAATACAACTTATCATCCACAAACAAATGGACATACAATGATCCAAAATGGATCCTTCAATACTTAAAAACTATCGCATGAGAAAAACCTTTACAACGGGCGGATTATATGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

Contig10261___VAHFIVVMSTNSTGEVAHIFIKEIMRLHVFPKNIISDRDSKFTSTFWKELFASLGIELAFNTTYHPQTNGHTMIQNGSFNT
Q9ZPF9________________MAHFIPCHKTDDAMHIANLFFREVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQTEVVNRTLST

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain