SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene10246

Length: 1176 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene10246

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7037	45/47

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Thaumatin-like protein [Arabidopsis thaliana] gb\|AEE29691.1\| Thaumatin-like protein [Arabidopsis thaliana]	-	-	5.0e-20	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	thaumatin-like protein	-	-	0.0	53%

Source	InterPros	Term	Type	e value	Identity
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPE2

Fln msg:

Fln protein: MVGSRSSHQLPTAGTAMLLVIFASFVYLCAAESPVAYKTIKVVNNCAFPVWPAIVGSSDLPVPKMRKLKAAESFSWRADPFWSGSIWGRTGCVFNSRGLGGCDSGDCGGTLQCKDDERTADIMAITKAEFELLGGIAKPDTFTVSLEKGYNLPMSVVPSYMVNNISRSRPCESMACTADANAVCPKKLQMKKKGSVVTACKGHYDGYLPRSPTFSKAFAKACPRAFPFRSGTICPPSTVSYILTFCPRPHRHSH*

Protein Length: 256

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTCTTTCCTTTCCAAGTTCCAAAGCTAGCTGTGAAGTTCAGAGCAAGAAGAAGTGTTCGGTCAAAATTTGTATTCTCTTACTAAAATTCTCGTGTGACAGAGATGAAATGATGACAACTTCAAGGTAATCTTTGAAGCGTTTGGTGCTGCACTTGGGAATCGAGACTGCTGTTTGTACTAGTCCCAAAAAA_-_ATGGTTGGAAGTCGAAGCAGCCACCAGTTACCGACCGCAGGGACAGCTATGTTGCTTGTTATATTTGCATCTTTTGTCTATCTGTGCGCTGCAGAGTCCCCTGTGGCTTACAAGACAATAAAAGTTGTGAACAATTGTGCATTTCCTGTGTGGCCTGCGATTGTGGGGTCATCTGACCTTCCTGTCCCTAAGATGAGAAAGCTGAAAGCAGCAGAGTCATTTTCTTGGAGGGCGGATCCGTTCTGGTCAGGATCCATTTGGGGAAGGACTGGTTGCGTGTTCAATTCCCGGGGGCTGGGAGGCTGCGATTCCGGTGATTGTGGAGGAACTCTTCAGTGCAAAGACGATGAGCGTACTGCAGATATAATGGCAATCACAAAGGCGGAGTTCGAGCTTCTGGGAGGAATAGCGAAGCCTGACACTTTTACCGTTTCGTTGGAGAAGGGTTACAATCTTCCAATGTCTGTGGTTCCAAGCTATATGGTCAATAATATCAGCAGAAGCCGCCCCTGCGAGTCCATGGCTTGCACAGCTGACGCGAATGCGGTTTGCCCCAAAAAGCTGCAAATGAAGAAGAAAGGGAGTGTGGTTACTGCGTGCAAAGGTCATTACGATGGATATTTGCCCAGGTCTCCCACTTTCAGCAAGGCATTTGCGAAGGCCTGTCCGCGTGCGTTCCCTTTCAGAAGTGGCACCATATGTCCTCCTTCCACGGTCTCTTACATCCTCACCTTCTGCCCTCGTCCACACCGCCATTCCCACTGA___GTATGTAATGTGCTTTGTTAGGCCCTTAGGCTTCTGTGTGGTGCTCTTTATCTCTGAATGGCGAAGTTGCTTAGTTATGATTTGGATGTATAATTGTAAACAAAGAGGGAAAGCCAGCAGGTGGCTAGACCTGCCCTGTAAGTAAATAAGAATAGTTTGAGCATATATTAAAATGCAATAGCTTCTATGTAAAT

Fln Alignment:

Contig10246___GSRSSHQLPTAGTAMLLVIFASFVYLCAAESPVAYKTIKVVNNCAFPVWPAIVGSSDLPVPKMRKLKAAESFSWRADPFWSGSIWGRTGCVFNSRXXXXXXXXXXXXTLQCKDDERTADIMAITKAEFELLGGIAKPDTFTVSLEKGYNLPMSVVPSYMVNNISRSRPCESMACTADANAVCPKKLQMKKKGSVVTACKGHYDGYLPRSPTFSKAFAKACPRAFPFRSGTICPPSTVSYILTFCPRPHRHS
B8LPE2________________GSRSSH--PTAGTAMFLVTFVCFLYLGAAESPMAYKTIRVVNNCAFPVWPAIVGSTDLPPPQLRKLRAGESYSWKADPFWSGSVWGRTGCVFNSQGLGGCDSGDCGGNLQCEDDERTADIMAITKAEFELLGGIAKPDTYSVTLEKGYNLPMSVVPSYAANNISISRPCESMACTADANAVCPKKLQEKKKGSVVTVCKGHYDGYLPRSPAFSKAFQKACPRAFPYRSGTICPPSTASYTLTFCPRRRRSS

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
141		83		16	0.994512
142	66		33		1.0
143	66		16	16	0.988813
145			16	83	0.994512
148	83		16		0.994512
150		16	66		0.988813
151		33	66		1.0
153	66	16		16	0.988813
154	83		16		0.994512
155			16	83	0.994512
158			16	83	0.994512
160		16	83		0.994512
162	83	16			0.994512
163			83	16	0.994512
165	16		83		0.994512
619	80	20			1.0
621			80	20	1.0
622	80	20			1.0
623	80		20		1.0
625	80		20		1.0
626	20		80		1.0
628		20	80		1.0
629	80			20	1.0
630	80			20	1.0
632		80	20		1.0
636	80			20	1.0
646	27	72			1.0
821	89			10	0.999919
822		6	93		0.999453
826	93		6		0.999453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain