SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene10200

Length: 1349 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene10200

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22616	56/58

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_1.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=E0CQ58_VITVI	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	87%
Blast2go	neutral invertase-like protein	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-fructofuranosidase.	EC:3.2.1.26	-	0.0	87%

Source	KEGGs	Term	Type	Identity
Blast2go	Galactose metabolism	00052		87%
Blast2go	Starch and sucrose metabolism	00500		87%
Blast2go	Metabolic pathways	01100		87%
Blast2go	Sucrose alpha-glucosidase.	EC:3.2.1.48	-	87%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	87%
Blast2go	Metabolic pathways	01100		0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	sucrose catabolic process, using invertase or sucrose synthase	GO:0010131	Biological Process	87%
Blast2go	root development	GO:0048364	Biological Process	87%
Blast2go	sucrose alpha-glucosidase activity	GO:0004575	Molecular Function	87%
Blast2go	cytosol	GO:0005829	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR006937	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D8RY26

Fln msg: your sequence is shorter than subject: 297 - 562

Fln protein: VVTLAVTQLFFMALRCARQLLKPDAGGKEFIERIDKRLHALSYHMRSYFWLDFQQLNDIYRYKTEEYSHTAVNKFNVIPDSLPDWVFDFMPMRGGYFIGNVSPARMDFRWFCLGNCVAILSCLATPEQSLAIMDLIEERWDELVGEMPLKVSYPAIENHEWRIVTGCDPKNTRWSYHNGGSWPVLLWLLTAACIKTGRPHIAKRAIELAERRLSKDGWPEYYDGKLGRYIGKQARKFQTWSVAGYLVAKMMLEDPSHLGMISLEDVVTLAVTHQITFLDMLKSIVRGINPFLLYNG*

Protein Length: 298

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGTTTTTCATGGCACTTAGATGTGCTCGACAGTTGCTTAAACCAGACGCTGGAGGAAAAGAATTTATAGAGCGAATTGATAAGCGCTTACATGCATTAAGTTATCACATGCGAAGTTATTTCTGGCTTGACTTTCAGCAGCTTAATGACATCTATAGATACAAAACTGAAGAGTACTCTCACACTGCTGTGAATAAGTTTAATGTCATTCCTGATTCTCTTCCAGATTGGGTATTTGACTTCATGCCAATGAGAGGTGGCTATTTTATTGGCAATGTGAGTCCTGCAAGGATGGACTTCAGATGGTTTTGTCTGGGAAATTGTGTTGCAATTTTGTCATGTTTGGCAACCCCTGAGCAATCCCTGGCAATCATGGATCTTATTGAAGAGCGGTGGGATGAGCTGGTTGGAGAAATGCCTCTCAAGGTGTCTTACCCTGCGATAGAAAATCACGAATGGCGAATTGTAACTGGTTGTGATCCAAAGAATACCAGATGGAGCTACCATAATGGAGGATCTTGGCCAGTACTTCTGTGGTTGCTCACTGCTGCCTGCATCAAAACTGGAAGGCCACATATTGCAAAACGAGCAATTGAACTTGCAGAACGGAGATTATCTAAAGATGGATGGCCTGAATACTATGATGGTAAACTTGGAAGATACATTGGAAAGCAAGCTCGGAAATTTCAGACTTGGTCTGTTGCTGGCTATCTGGTAGCTAAGATGATGCTTGAAGATCCATCTCACTTGGGTATGATATCACTTGAGGACGTCGTGACCTTGGCTGTCACTCACCAGATCACATTCCTGGACATGTTGAAGTCCATCGTTAGGGGAATCAATCCTTTTCTCTTGTATAATGGATAG___GCCCATCCCTGTTCATAATCTTGTATAATTTCTGTGGCATTTTACTTGTTTGTTCACTCCAGGACCGAAGAAGAAGCCAACTTTGGTTTCTTCTTTGATGTACTGGAGTCTGGACTATAATTATTTGATGGAAAGACAAGATGCTGATGCACTTGGAGTTTACCTGAGCATATTAAAGGTCCCACATGGAATTAGACATCAGAAGTTTCAAATGCAAGGTACTATTCGCTGTGTTATATAGCAGAGAGCTCTACAAACATCTATCTTTCCATTGGGACCTCGGCTACAGTATTTTGGTGAGTCTGAGCATTACAACAGAGTTTCATTCAGAGTTGGGCTCTTGATAGACACACGCACAAATGGACAGTCAAATTAACAGCAGCATATCTGCGTACTGAGTAACTTTATTACCTCCTAACTCGTAATAATAAAGCAAATGGGATGTGATTGCATGGAC

Fln Alignment:

Contig10200___LAVTQLFFMALRCARQLLKPDAGGKEFIERIDKRLHALSYHMRSYFWLDFQQLNDIYRYKTEEYSHTAVNKFNVIPDSLPDWVFDFMPMRGGYFIGNVSPARMDFRWFCLGNCVAILSCLATPEQSLAIMDLIEERWDELVGEMPLKVSYPAIENHEWRIVTGCDPKNTRWSYHNGGSWPVLLWLLTAACIKTGRPHIAKRAIELAERRLSKDGWPEYYDGKLGRYIGKQARKFQTWSVAGYLVAKMMLEDPSHLGMISLED
D8RY26________________IEIQALFFMALRCAKFLLKPEAGGKEFIERIDKRLHALRYHLRSYFWLDFQQLNNIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMPMKGGYFIGNVSPARMDFRWFTIGNCVAILSSLTTPEQATAIMDLIEERWDDLIGEMPLKVTYPALEGHEWKIVTGCDPKNTRWSYHNGGSWPVLLWLLTAACIKTGRPQIARRAIEIAEARLSKDGWPEYYDGKTGRYIGKQARKLQTWSIAGYLVAKMMLEDPSHLGMVSLEE

SNPs (tot: 68)

Position	A %	C %	G %	T %	Probability
292			20	80	0.995493
294		20		80	0.995493
296		20		80	0.995493
299		20	80		0.995493
300	20	80			0.995493
337		20		80	0.995493
343			80	20	0.995493
346	80	20			0.995493
347	80	20			0.995493
358		20		80	0.995493
359			80	20	0.995493
436		20	80		0.995493
439		20		80	0.995493
444	80	20			0.995493
445	80	20			0.995493
446	80			20	0.995493
449		80	20		0.995493
452		80	20		0.995493
456	80	20			0.995493
457	20		80		0.995493
567		28	71		1.0
570		28		71	1.0
574		71	28		1.0
578		28	71		1.0
579		71		28	1.0
582		71	28		1.0
591	85			14	0.993533
592	85	14			0.993533
621			83	16	0.994512
660		16		83	0.994512
662			83	16	0.994512
664		83	16		0.994512
668	83	16			0.994512
670	83		16		0.994512
673	83		16		0.994512
675		16	83		0.994512
677		16		83	0.994512
678			83	16	0.994512
679		16	83		0.994512
680	16			83	0.994512
692	83			16	0.994512
694	83		16		0.994512
803	41	58			1.0
805	41			58	1.0
807	41		58		1.0
808	41			58	1.0
812		58	41		1.0
813	41	58			1.0
816	41			58	1.0
817	41		58		1.0
820		41		58	1.0
822		41		58	1.0
838	81	18			1.0
839			20	80	1.0
842		80	20		1.0
845	20		80		1.0
846	80	20			1.0
848	80			20	1.0
852		20		80	1.0
856	80	20			1.0
858		20	80		1.0
975	76	5		5	0.999894
977	76	11		5	0.999894
978	82	5		11	0.999919
980		82		17	1.0
982	82		5		0.999919
986		11	5	82	0.999919
987	11		5	82	0.999919

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain