SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene10195

Length: 701 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene10195

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1188	7/11
SustainPine v2.0	sp_v2.0_unigene20161	3/11

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock protein DnaJ [Medicago truncatula]	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	protein	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	74%
Blast2go	unfolded protein binding	GO:0051082	Molecular Function	74%
Blast2go	heat shock protein binding	GO:0031072	Molecular Function	74%

Source	InterPros	Term	Type	Identity
Sma3	Chlorophyll A-B binding protein, plant	IPR001344	-	-
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Chaperone DnaJ, C-terminal	IPR002939	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3	Ribosomal protein S14, conserved site	IPR018271	-	-

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
185	85	14			0.993533
186			14	85	0.993533
192	85	14			0.993533
193	85			14	0.993533
194	85			14	0.993533
196		85	14		0.993533
197		14	85		0.993533
201	14			85	0.993533
202	85	14			0.993533
204		14		85	0.993533
205	14			85	0.993533
227	16		83		0.994512
258			14	85	0.993533
259	85			14	0.993533
261			14	85	0.993533
263		85	14		0.993533
265		14		85	0.993533
272			14	85	0.993533
278	85	14			0.993533
280	14		85		0.993533
291		14		85	0.993533
565		25	75		0.996473
568	75	25			0.996473
570		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain