SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene10094

Length: 309 nt

UniGene Fasta

>uagpf_v2_unigene10094
CGTCGTGACCTTGGCTGTCACTCAAGTCTCATACAGTGTATTCAAATGTCTCCAAAGGAATTCTGGCAAAATCTAAGGACTTGATAAAATCTTTTGGAACAGATGATCATGAAAATATATGTTTGGAGGTTCTTAATAAAGGTGAGCTCCAAATTGCGGGAAAGGAGAGAGAATCTCAGTTATCAAGCCAGTTCCGTGACATTGCAACAATTGTGATGGAGAAGACAATCAACCCTGAGACTGATCGGCCATATACAATCAACATGATTGAACGCCTAATGCACGAAGTCCATTTTGCTGTAGATCCTC

Ace file of the UniGene uagpf_v2_unigene10094

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1251	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	Shwachman-Bodian-Diamond syndrome protein, putative n=1 Tax=Ricinus communis RepID=B9S2M8_RICCO	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	74%
Blast2go	positive regulation of translation	GO:0045727	Biological Process	74%
Blast2go	ribosome biogenesis	GO:0042254	Biological Process	74%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	74%

Source	InterPros	Term	Type	Identity
Sma3	Ribosome maturation protein SBDS, C-terminal	IPR018978	-	-
Sma3	Ribosome maturation protein SBDS, conserved site	IPR018023	-	-
Sma3	Ribosome maturation protein SBDS, N-terminal	IPR019783	-	-
Sma3	Ribosome maturation protein SBDS	IPR002140	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NNC3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 232 aas, your sequence is shorter than subject: 102 - 380

Fln protein: S*PWLSLKSHTVYSNVSKGILAKSKDLIKSFGTDDHENICLEVLNKGELQIAGKERESQLSSQFRDIATIVMEKTINPETDRPYTINMIERLMHEVHFAVDP

Protein Length: 103

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTCTCATACAGTGTATTCAAATGTCTCCAAAGGAATTCTGGCAAAATCTAAGGACTTGATAAAATCTTTTGGAACAGATGATCATGAAAATATATGTTTGGAGGTTCTTAATAAAGGTGAGCTCCAAATTGCGGGAAAGGAGAGAGAATCTCAGTTATCAAGCCAGTTCCGTGACATTGCAACAATTGTGATGGAGAAGACAATCAACCCTGAGACTGATCGGCCATATACAATCAACATGATTGAACGCCTAATGCACGAAGTCCATTTTGCTGTAGATCCTC

Fln Alignment:

Contig10094___LKSHTVYSNVSKGILAKSKDLIKSFGTDDHENICLEVLNKGELQIAGKERESQLSSQFRDIATIVMEKTINPETDRPYTINMIERLMHEVHFAVDP
A9NNC3________________LQSHTVYSNVSKGILAKSKDLIKSFGTDDQEKICSEVLNKGELQIAGKERESQLSSQFRDIATIVMEKTINPETDRPYTINMIERLMHEVHFAVDP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain